Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0264 ATGCCTGTAAATTTAGAGCCGTTGGATTTAGGAAGAGTTCAGATTCCATGCCACTTCAGATGCCCAATCTCCCTCGAGTTAATGCGTGACCCGGTTACAATATCCACGGGTCAGACTTACGACCGACCCGGCATCGAGTCATGGATCCTCTCCGGCAACACCACCTGCCCCGTCACACGTGCGCCTCTAACGGATCTCACTCTCATTCCAAACCACACGCTTCGCCGGTTAATCCAAGATTGGTGCGTCGCGAACCGGGATTTCGGTGTGGAGCGGATTCCGACTCCGAACCAACCGGCCGACCCGACTTCGGTTCGGACCTTGCTGAACCAAGCCTCGTCGACGGAAACGAGCACTTCTCTGCAAACTCGAATCTCCGCTCTGAGACGGCTCAGACGACTCGCTTCTGACTCGGACAAGAACCGCTCTCTCATTGGATCTTACAACGTCCGCGAGATTCTTCTCCGTAACGTATTCTGTGATTCCGGTTCCGATAGTGCGGAATTGAAGCAGGAGTCGCTCGCGCTTCTGGTGAATTTCCCTCTCGATGAATCGGAATGTGTTTCGATCGCATCTGGATCGGAGAGAATGAAGTACTTATCGCGTTTGCTATTTCATTCTTCTATAGACGTGCGAGTTAACTCCGCCGCAATGATCGAGATCGTCCTGACCGGAATTCGTTCGCCGGAGCTCCGATGTCAGATCAGTAATGTCGAGGAGATCTACGACGGAGTGATCGATATTTTGAGGAGTCCGATTTCGTACCCTCGCGCGCTCAAGATTGGGATCAAGGCCTTGTTCGCTTTGTGCCTGGTGAAACAAACGCGGTACAGAGCGGTCGACGCCGGAGCGCCGGAGATCCTCCTCGACCGGATCGCTGATTTCGAGAAGTGCGACGCGGAGAGAGCTCTGGCGACGATTGAGTTGCTCTGCCGAGTTCCGGCAGGACGCGCCGCGTTTGCAGATCACGCCCTGACGGTGCCGCTGTTGGTGAAGATAATACTGAAGATATCGGAGCGGGCGACGGAGCACGCGGCCGGAGCTCTGGTGTCTCTGTGTACGGAATCGGAGCATTGCCGGAGAGAGGCGGTGGCGGCGCGTGTGTTGACGCAACTGCTGTTGGTGGTGCAGAGTGAATGCACGGAGAGAGCAAAGAGGAAGGCGAAGTTGTTGCTGAAGCTTCTTCGAGATTCGTGGCCGCAAGATTCCGTCGGGAATTCTGACGATTTTGCATGCAGTGAAGTTGTAGTACCGTTTTGA 1260 0.5484 MPVNLEPLDLGRVQIPCHFRCPISLELMRDPVTISTGQTYDRPGIESWILSGNTTCPVTRAPLTDLTLIPNHTLRRLIQDWCVANRDFGVERIPTPNQPADPTSVRTLLNQASSTETSTSLQTRISALRRLRRLASDSDKNRSLIGSYNVREILLRNVFCDSGSDSAELKQESLALLVNFPLDESECVSIASGSERMKYLSRLLFHSSIDVRVNSAAMIEIVLTGIRSPELRCQISNVEEIYDGVIDILRSPISYPRALKIGIKALFALCLVKQTRYRAVDAGAPEILLDRIADFEKCDAERALATIELLCRVPAGRAAFADHALTVPLLVKIILKISERATEHAAGALVSLCTESEHCRREAVAARVLTQLLLVVQSECTERAKRKAKLLLKLLRDSWPQDSVGNSDDFACSEVVVPF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0264 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 90 IPR013083 -
Sto10g0264 419 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 416 - -
Sto10g0264 419 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842|GO:0016567
Sto10g0264 419 SUPERFAMILY ARM repeat 118 395 IPR016024 -
Sto10g0264 419 SMART Ubox_2 18 81 IPR003613 GO:0004842|GO:0016567
Sto10g0264 419 CDD RING-Ubox_PUB 19 60 IPR045210 -
Sto10g0264 419 Gene3D - 97 409 IPR011989 -
Sto10g0264 419 PANTHER WDSAM1 PROTEIN 10 416 IPR045185 GO:0061630
Sto10g0264 419 Pfam U-box domain 15 86 IPR003613 GO:0004842|GO:0016567
Sto10g0264 419 SUPERFAMILY RING/U-box 8 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0264 Sto-Chr10 2137658 2138917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0264 1 419 U-box Gene Family AT3G19380 66.745 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0264 - - mnt:21410125 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0264 10 2137658 2138917 Sto10g0264 10 2137658 2138917 ECH