Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0247 ATGTCTTCCTCCAAGCGTCACAGACTCGCCGGACCTCCCACCTCCGACTTCCCTCCGCCGCCGCCTCCCGCCGTCCTCTCCAGAGACAACGAACTCTCCGTCATCGTCGCCGCACTCACCAATGTCGTTGCTGgctccaccaccaccgccgccgtctcatcatcatcttccgcCCTTGACCTAATCCAAGAAATTCGCCTCCCGGTGACCTCCGATGCAACCGCAGCAGCGTcctcctccgccgccgccgccgccgttgCCGCAATCGGAACTAGATCCGATCAGATTGTGCCGGCGGCCGCGAACATCGAGACTTGCGGCGAATGCAAGATCGAAGGATGCTTGGGTTGCAATTTCTTTCCGGAGGAGAAGAAAAACGGCGGGAGAAAACAGAGGAGAACGGCGGCGACGGTTACGGCCGCGGCGACGGCGGcgccgaagaagaagaagtacaGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATCCGAGACCCGAGACGCGCGACCCGGGTGTGGTTGGGGACGTTCAACACGGCGGAGGAAGCCGCACGCGCGTACGATAAAGCGGCGATTGAGTTTCGCGGGCCGCGAGCGAAGCTCAATTTCTCGTTTCCCGATAACTCGCTGAGGAGTTGTTCGCCGCAAACAGagcaggaagaagaagaagaagagggagcAAGAGTAATGGCAATGGCAGAGGAAGGAGAGGGAAATTCGAATCCCAGAAATTACTATGAGAGTGATCATTGGATGATGGAAAGGGAAAgtgcaaataataataataatagtaataaggaAAATGAATTCTGGGACAGAATTGGAGATGCTGATTTTCAGCAAttgatgacgatgatgatggATTTTGGAGATTCTTCAGACTCTGCTACTACTACCAATAGTCACAGTACTCATAGTTGGTGA 933 0.4609 MSSSKRHRLAGPPTSDFPPPPPPAVLSRDNELSVIVAALTNVVAGSTTTAAVSSSSSALDLIQEIRLPVTSDATAAASSSAAAAAVAAIGTRSDQIVPAAANIETCGECKIEGCLGCNFFPEEKKNGGRKQRRTAATVTAAATAAPKKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTAEEAARAYDKAAIEFRGPRAKLNFSFPDNSLRSCSPQTEQEEEEEEGARVMAMAEEGEGNSNPRNYYESDHWMMERESANNNNNSNKENEFWDRIGDADFQQLMTMMMDFGDSSDSATTTNSHSTHSW 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0247 310 MobiDBLite consensus disorder prediction 128 150 - -
Sto10g0247 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 24 296 - -
Sto10g0247 310 MobiDBLite consensus disorder prediction 209 230 - -
Sto10g0247 310 SUPERFAMILY DNA-binding domain 150 207 IPR016177 GO:0003677
Sto10g0247 310 SMART rav1_2 150 213 IPR001471 GO:0003700|GO:0006355
Sto10g0247 310 Pfam AP2 domain 150 199 IPR001471 GO:0003700|GO:0006355
Sto10g0247 310 MobiDBLite consensus disorder prediction 1 26 - -
Sto10g0247 310 CDD AP2 151 206 IPR001471 GO:0003700|GO:0006355
Sto10g0247 310 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 296 - -
Sto10g0247 310 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700|GO:0006355
Sto10g0247 310 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700|GO:0006355
Sto10g0247 310 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Sto10g0247 310 ProSiteProfiles AP2/ERF domain profile. 150 207 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0247 Sto-Chr10 2042226 2043158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0247 26 218 AP2-EREBP Transcription Factor Family AT4G34410 43.868 1.59e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto10g0247 AP2 7.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0247 - - ccaj:109799734 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0247 10 2042226 2043158 Sto10g0247 10 2042226 2043158 ECH
Sto2g0603 2 5120508 5121401 Sto10g0247 10 2042226 2043158 ECH