Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0239 ATGGACGACTATTTGAGCAGCGACGACGATTATCATTACTCCGATCAGGGGTCCGTCGACGGCTTCGAAAACGACGAACCCGATGTTCAGTTGGTCACTCCCAAGGGTCCCACAACTCTGGTGATTACCAAGGAATCACTTCTAGCTGCACAgAAAGACGATTTGCGTAGAGTAATGGAAATGCTATCATTGAGAGAGCACCATGCACGTACCCTGCTTATTTATCATCGTTGGGATGTGGAGAAGCTGTTTGCAGTGTATGTAGACAAGGGAAAAGCTGCCTTGTATGCTGAAGCTGGTGTTAGTGTGGATGAACATTGTGAACTGGACCCATCAGCTCCTCCATCGGTAATGTGTGATATCTGCATAGAGGATGTTCCGTGCCATGAAGCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACAACTGTTGGACAGCACATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGGTGCATGGCACACAAATGTAATGCTATTTGTGATGAAGCTGTTGTGAGAAATCTAGTCAGTAAAGAACACCCTGATATGGCAGAGAAATTTGATCGGTTTCTTCTTGAATCCTACATTGAAGATAATAAAAGAGTTAAATGGTGTCCTAGCACTCCTCATTGTGGGAATGCTTTACGTGTAGAAGATGATGAATTATGTGAGGTAGAATGTTCGTGTGGTTTACAGTTTTGTTTTAGTTGCTTGTCGGAGACACACTCCCCATGCTCATGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATTGCAGTTCATACAAAACCTTGTCCAAAATGCCACAAACCAGTGGAGAAGAATGGTGGTTGCAACTTGGTTAGTTGTATCTGTGGCCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGCCGGGAGCATACTTGGTCAAGCATAGCTGGCCATAGCTGTGGTCGCTACAAACAACTAGAGAAAACGGCTGAACGGGCGAAGCGAGATCTATATCGGTATATGCATTATCATAATCGTTATAAAGCCCACACAGACTCCTTTAAACTTGAAAGTAAATTAAAAGAGACTATACAAGGGAAGGTTGCTATTTCTGAAGAGAGGGATTCTACGCTCAGAGATTATAGCTGGGTAAATAATGGACTCGCCAGACTTTTCAGATCTAGGCGTGTCCTATCGTATTCATATCCATTTGCATTTTATATGTTTGGAGATGAGCTATTTAAGGATGAAATGTCAGAAGAGCAAAGGGAAATAAAACAGCACTTATTTGAGGATCAGCAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCCAAAATTTTGGAGGAACCCTTTGACCAGTTTACAGATGATAAGGTTATGGAGATAAGGATTCAAGTGATCAATTTGTCAACAATTATCGACAATCTGTGCCAGAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTTCAATTGGGCATTCACAGTATTGCACCATACAAGTCAAAAGGCATAGAGAGGGCATCCGAACTTTCAGCTTGTTGGAGCCAAAAAGATTCTTGTATATATGCAAGTGTAGGTGGAACAGCAAATCATGATCGGCCTTCTGGGTCTGGGAGTTCAGATGAGAGTGTATGGTCTTCTCATAAGCGTGCTAGGAAAGAAGAGGCTGGTGGTGGCCTTTTTGATCTAAACTTGCCAGCAGAGGTTGTGGACAGAAATTGA 1749 0.426 MDDYLSSDDDYHYSDQGSVDGFENDEPDVQLVTPKGPTTLVITKESLLAAQKDDLRRVMEMLSLREHHARTLLIYHRWDVEKLFAVYVDKGKAALYAEAGVSVDEHCELDPSAPPSVMCDICIEDVPCHEATRMDCGHCFCNNCWTAHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKEHPDMAEKFDRFLLESYIEDNKRVKWCPSTPHCGNALRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQLEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGKVAISEERDSTLRDYSWVNNGLARLFRSRRVLSYSYPFAFYMFGDELFKDEMSEEQREIKQHLFEDQQQQLEANVEKLSKILEEPFDQFTDDKVMEIRIQVINLSTIIDNLCQKMYECIENDLLGSLQLGIHSIAPYKSKGIERASELSACWSQKDSCIYASVGGTANHDRPSGSGSSDESVWSSHKRARKEEAGGGLFDLNLPAEVVDRN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0239 582 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED 6 515 - -
Sto10g0239 582 MobiDBLite consensus disorder prediction 1 30 - -
Sto10g0239 582 MobiDBLite consensus disorder prediction 539 553 - -
Sto10g0239 582 Pfam Ariadne domain 331 582 IPR045840 -
Sto10g0239 582 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 -
Sto10g0239 582 SUPERFAMILY RING/U-box 116 202 - -
Sto10g0239 582 SUPERFAMILY RING/U-box 260 317 - -
Sto10g0239 582 SMART ibrneu5 260 325 IPR002867 -
Sto10g0239 582 SMART ibrneu5 190 252 IPR002867 -
Sto10g0239 582 Gene3D - 248 495 - -
Sto10g0239 582 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Sto10g0239 582 SUPERFAMILY RING/U-box 190 258 - -
Sto10g0239 582 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Sto10g0239 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 205 IPR013083 -
Sto10g0239 582 MobiDBLite consensus disorder prediction 538 563 - -
Sto10g0239 582 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 515 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0239 Sto-Chr10 1994778 1998648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0239 59 539 ARIADNE family AT2G16090 74.639 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0239 K11968 - gmx:100783343 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0239 10 1994778 1998648 Sto10g0239 10 1994778 1998648 ECH