Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0218 ATGGGCACGTTTGTAGGACACATAGTACCTGGATTGGCACTCACCCTTCTTGGGCTATGGCACACCATCAACACCATCAAAGCCTATTTTCTGAAAGGCCCTTCAAACTTCACAGTAAGATTCTGGTACCAATTCACTACACTTCACTCTAAACTCAAACACTTGGAgctcatttccattctctccTTTTCCATTCTTGCaattttcattcaaattctGGACTTCCCTTTCTTTCGCTTCGCCTTTAAGCTCGATAACTTCGAGCATGCCTCCATGTTCATGCACCTTGCTGTGTTTGCAAGCTTCACCCTTTGTGCTGAATTTTTCACTGATTCATCATCTGAGAAGAATCTCTTATCTGGGTTTATTGGGATCCTTGCATCCTCAGTGTTTGGTCAAGAACTTTTTCTGCTTCACTTCCACTCCACTGATCATGTTGGACTTGAAGGACACTACCACTGGTTGCTTCAGCTTATAGTGTTGATCTCACTTTTAGCATCCATTGCTGCAACTTCTTTCCCTACTAGTTTTCCTGCAGCTCTTGTTCTTTCCATTTCTGTCATGCTCCAAGGTTGCTGGTTCTTGAACATGGGATTTATGTTATGGGTTCCTGCTTTTGTCCCTCAAGGATGCACCATGAATGATCTCACCAAGGCCATTAGTGGTTACGGTCATGGTCATGGTCATGGCATGGTTGGAGCAATTACTTGTGCATCTGATGAAGCTGATTTCAGAGCTAGAGCTCTTGCAAATTTACAATTCAGCTGGACAATTTCTGCAATTCTGATACTTTCAGGACTTGTTTGTCTCAAATCGGCTCGAAAACCGACCAATTCGGAACGATTGACTGAATACCAGAGGCTTCATAGTAGAGTTGCAGATTCCATCATTATAAGCACTGAAGttttgaagaagaacaagaatatGAAGAGGGAAGAGAGGTTCAAGAGAATGGAGGACACCGGAGGAATTCACCGCCGGCGAACTACCTTGCCAGAGATTCCACCGGCGCACTTCTTTAAGATAATACTCCCCACTACGATTCTTGACAAGAAACTGAGAATACCCATGACGTTTATTAAAGACCAGGGTGAtggtttttcttcttcctccattgTGACCTTGTCGGATCCAAACCTTCGAGAATGGAAGATTGGTTTGGAgaaaagtgaagaagaagaagatgtttGGTTGAGTGAAGGATGGGAGAAATTCATGGAATACTACTCAATCACCAAGCAAAACATTCTGGTTTTCAGATACGAAGGAGGTTCAAAATTCCATGTTTTGATATTCGACATGAGTGGTTCAGAGATTCAATaccctcatcatcatcatcatcttcatcgtcATCCAAAACCCAACATTAAGTTGGAAAGAGAAGAGGTTATCTCATTGGACTCAACAAAGGACAATGACCATGATCATCATCAATGgaacaaaaacaacaacaacaatgatgatgattatgatgatCATGATTATGAGTATGTTGAAGAAGAACAcattaatgatgatgatgatgatgatgcataTTATATACCATCCCCATCAAAATCCCCATCTCCTGTGTTCACTCCAAGAAGAAGAGGATTCACCAAATTCATGGATCAAGGaccaagaagagaaagagaaagagaaagtggaagaggaagaggaagagagaagCAATATGCTCCATCAAGTTCAAATTTTGGATTcagaagaaagaggaagaggCATAATATAGTGAGTGAAAGTGAATATTCAGAAAGTGATGAAGAAGTTTataataatcatcatcatcatcattatcatggaagaagaggaggaagatcCAATGGAGGGAGAAGTGGAATTAGAGTGAAGAAAGAGGAGAATGTGGAATGGGTTGGTAGAGAAACATGCAAGTCAAAATCATACAGAAAGAGGAAGATTACAGCAAGAGAAAGTGAAAGGGTCATGCAAGCTGCAAGAGAGTACATCTCTGAGTTTCCTTCTTTCATGGCAGTCTTGAGGCCTCACAACTTGTACAACAGTTTTGTGTATGTGCCAGCCACATTTGCCACCAAGTACTTGGATGGACGATCAGAACTTGTAACATTGGAGACATGGGAAGGAAAGCAATGGTGTGCTCGATGCATTTACAGAAGAGGATCTGGTTGTGGAAGAAGCATAGGGAGAGGATGGGCTAAGTTTGCCATGGACAATGCCATTCAAGAAGGAGATGTCTGTGTCTTCGAGCTTGTAAGCAGGATTGACATTATCTTGAGAGTCGGAATCTTTCGTCTCAGTAATTTTGTGGATCGATAA 2292 0.3639 MGTFVGHIVPGLALTLLGLWHTINTIKAYFLKGPSNFTVRFWYQFTTLHSKLKHLELISILSFSILAIFIQILDFPFFRFAFKLDNFEHASMFMHLAVFASFTLCAEFFTDSSSEKNLLSGFIGILASSVFGQELFLLHFHSTDHVGLEGHYHWLLQLIVLISLLASIAATSFPTSFPAALVLSISVMLQGCWFLNMGFMLWVPAFVPQGCTMNDLTKAISGYGHGHGHGMVGAITCASDEADFRARALANLQFSWTISAILILSGLVCLKSARKPTNSERLTEYQRLHSRVADSIIISTEVLKKNKNMKREERFKRMEDTGGIHRRRTTLPEIPPAHFFKIILPTTILDKKLRIPMTFIKDQGDGFSSSSIVTLSDPNLREWKIGLEKSEEEEDVWLSEGWEKFMEYYSITKQNILVFRYEGGSKFHVLIFDMSGSEIQYPHHHHHLHRHPKPNIKLEREEVISLDSTKDNDHDHHQWNKNNNNNDDDYDDHDYEYVEEEHINDDDDDDAYYIPSPSKSPSPVFTPRRRGFTKFMDQGPRRERERESGRGRGREKQYAPSSSNFGFRRKRKRHNIVSESEYSESDEEVYNNHHHHHYHGRRGGRSNGGRSGIRVKKEENVEWVGRETCKSKSYRKRKITARESERVMQAAREYISEFPSFMAVLRPHNLYNSFVYVPATFATKYLDGRSELVTLETWEGKQWCARCIYRRGSGCGRSIGRGWAKFAMDNAIQEGDVCVFELVSRIDIILRVGIFRLSNFVDR 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0218 763 Gene3D - 638 761 IPR015300 -
Sto10g0218 763 SUPERFAMILY DNA-binding pseudobarrel domain 335 435 IPR015300 -
Sto10g0218 763 ProSiteProfiles B3 DNA-binding domain profile. 660 758 IPR003340 GO:0003677
Sto10g0218 763 MobiDBLite consensus disorder prediction 504 588 - -
Sto10g0218 763 MobiDBLite consensus disorder prediction 468 488 - -
Sto10g0218 763 MobiDBLite consensus disorder prediction 593 612 - -
Sto10g0218 763 CDD B3_DNA 659 756 IPR003340 GO:0003677
Sto10g0218 763 PANTHER PROTEINASE INHIBITOR I4, SERPIN (DUF716)-RELATED 1 303 - -
Sto10g0218 763 CDD B3_DNA 338 433 IPR003340 GO:0003677
Sto10g0218 763 PANTHER OS02G0167775 PROTEIN 1 303 - -
Sto10g0218 763 MobiDBLite consensus disorder prediction 574 588 - -
Sto10g0218 763 ProSiteProfiles B3 DNA-binding domain profile. 338 435 IPR003340 GO:0003677
Sto10g0218 763 MobiDBLite consensus disorder prediction 534 554 - -
Sto10g0218 763 Gene3D - 333 436 IPR015300 -
Sto10g0218 763 SUPERFAMILY DNA-binding pseudobarrel domain 656 758 IPR015300 -
Sto10g0218 763 SMART B3_2 661 758 IPR003340 GO:0003677
Sto10g0218 763 SMART B3_2 339 435 IPR003340 GO:0003677
Sto10g0218 763 Pfam Family of unknown function (DUF716) 121 269 IPR006904 -
Sto10g0218 763 Pfam B3 DNA binding domain 339 433 IPR003340 GO:0003677
Sto10g0218 763 Pfam B3 DNA binding domain 663 756 IPR003340 GO:0003677
Sto10g0218 763 MobiDBLite consensus disorder prediction 468 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0218 Sto-Chr10 1840096 1844893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0218 630 761 REM Transcription Factor Family AT1G49480 43.609 1.87e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto10g0218 DUF716 3.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0218 - - jre:109017525 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0218 10 1840096 1844893 Sto10g0218 10 1840096 1844893 ECH