Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0217 TTGAGGAAATTTGGGGGTGAGCTCTCTACATTCGCTACCCTCACTGTGCCTGATGGCAATGTATGGCGTGTTGGACTGAAAAAGGCAGACAACAAAATTTGGTTCCATGATGGTTGGCAGGATTTTGCTCAACGTTACTCCATTGGTGTTGGGTATTTCCTGGTGTTTAGATATGAAGGGAATTCATTGTTCAATGTTCATATTTTCCATTTGGCTACATCCGAGATAAACTATCAATTAGGCACACGAAACAATAATGAAGGGCCGTACTTCACCAATCAACATCATATTTTTGACGAAATGGAAGATGAAGACTCCATTGAATACTTGGGTTCAGCACCTTCACATCTAAGCCCCGGTGCATTGCAAAACAAGCCTTTTACTGGATCTGTAGATCAGTTGACACCTGGCAAGAACTATACTCCTCCATCATTACAGAATTTGTTTAATGGGTCTAAACTTAATAGTGTAAACTGGGGAGACAGTGGAAATGCCCTTTCTTCGAAGGGTGCCAATTCACAAAAGAATCAGTTGACCAGAGATATAGGCGTTCAGTTTAATGCAGCTGAGTTTAAGAGGTCTACTGAAGAATTGAAATTGCATTCCTCCAATGAACAAACGGAAAGAGTTAAGAAAACTGTAAGAAAGAAGCGGAGAATCGATCCCGATGGTGATGATCCCTCTCCACATCATGAAGAAGAGGTAGAAATACGCTTTAGATTTTACGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACagcagaagaaagagaaagggcaGTTAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTAGGGTTGTCCTACGACCCTCCTATTTGTACAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGAGGTTTCAGGTTTCATCAAACTTCAGACTTCAGATGGGAGACAGTGGCCGGTTCGCTGCCTTTATAGAGGGGGCAGAGCGAAGTTAAGCCAGGGGTGGTTCGAATTTGCGCAGGATAACAACCTAGGAGAAGGCGACGTCTGTGTTTTTGAGCTGCTTAGAATGAGGGATGTAGTGCTGAAAGTTACTATATTTCAAGTCCTTGAAGATGAAGTGGGATTATTGAACCCTTCTATGCAGCAACAGCAAAACCAGAACATAAGCCCAACATCGAAAATGTTGAACACTCCCTTGCAGCGCTTGAGCCCTACGAAACTGATTAGAAATTAG 1233 0.4152 LRKFGGELSTFATLTVPDGNVWRVGLKKADNKIWFHDGWQDFAQRYSIGVGYFLVFRYEGNSLFNVHIFHLATSEINYQLGTRNNNEGPYFTNQHHIFDEMEDEDSIEYLGSAPSHLSPGALQNKPFTGSVDQLTPGKNYTPPSLQNLFNGSKLNSVNWGDSGNALSSKGANSQKNQLTRDIGVQFNAAEFKRSTEELKLHSSNEQTERVKKTVRKKRRIDPDGDDPSPHHEEEVEIRFRFYESASARKRTVTAEERERAVNAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQTSDGRQWPVRCLYRGGRAKLSQGWFEFAQDNNLGEGDVCVFELLRMRDVVLKVTIFQVLEDEVGLLNPSMQQQQNQNISPTSKMLNTPLQRLSPTKLIRN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0217 410 SUPERFAMILY DNA-binding pseudobarrel domain 2 70 IPR015300 -
Sto10g0217 410 PANTHER B3 DOMAIN-CONTAINING 1 400 - -
Sto10g0217 410 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Sto10g0217 410 CDD B3_DNA 272 366 IPR003340 GO:0003677
Sto10g0217 410 Pfam B3 DNA binding domain 9 69 IPR003340 GO:0003677
Sto10g0217 410 Pfam B3 DNA binding domain 277 366 IPR003340 GO:0003677
Sto10g0217 410 CDD B3_DNA 4 69 IPR003340 GO:0003677
Sto10g0217 410 MobiDBLite consensus disorder prediction 198 233 - -
Sto10g0217 410 Gene3D - 251 370 IPR015300 -
Sto10g0217 410 Gene3D - 1 72 IPR015300 -
Sto10g0217 410 ProSiteProfiles B3 DNA-binding domain profile. 274 369 IPR003340 GO:0003677
Sto10g0217 410 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 400 - -
Sto10g0217 410 SUPERFAMILY DNA-binding pseudobarrel domain 267 367 IPR015300 -
Sto10g0217 410 SMART B3_2 2 72 IPR003340 GO:0003677
Sto10g0217 410 SMART B3_2 274 369 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0217 Sto-Chr10 1833729 1835364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0217 1 371 B3 DNA Binding Superfamily AT3G18990 49.733 4.15e-115 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto10g0217 B3 1.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0217 - - gmx:100813285 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0217 10 1833729 1835364 Sto10g0217 10 1833729 1835364 ECH