Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0209 ATGTCTCAGGCACAACCATTGccagaggagaagaagaatagtaataataatatccAAGAAACAACAAGTAGTACAACCCCAAATCCCTCCTTCAAGTTAAATGCTCAAGCTCCCGAATTTGTGCCTAGATCGCATGCCCAGATGCCCATTTCGGGTTATTTCTATCCCTTTTTCCAGATTCTTGGTGGGGCTGGTGCTTCTGATTGGTTCTATGTCGGAGATCAAGATCCTTCCTCCTGTTTGATCTCCACTAACAATGTGGCGCTCCCCACCTGTTCGAAGAATGTCCTCACTCACGATCTTCAGCAGAAGATCGTTAAACAGGTGGAGTACCAATTCAGTGACATGAGTTTGCTAGCAAATGAATCTTTCCTGAAACAGATGAACAAAGATCCTGAAGGTTATGTTCCTATTTCGATTATTGCTTCCACCAAAAAGGTCAAGTCCCTCACTAGAAACATTCATTTGCTTACACAAGCACTTCGTTCATCTTCGAAACTTgttttaagtgCTGATGGGAAGAAGGTTAAACGTAAAATCCCTTTCACTGATAAGGAGAAAGAGGAATTGCAGTCTCGTACTGTTGTGGTAGAGAATTTACCTGAAGATCATTCCCATGAAAATCTTCTGAAAATATTTAGTGTAGTTGGAAGTGTGAAAACAATCAGAATTTGCCATCCCCAGGAATCTAATTCCCCCAGACCAAAAGGTGATCTCTTCATCAGTAACAAGATCCATGCACTCGTGGAGTATGAGACACCATATATAGCTGAGAAAGCGGTTGAAAAGTTGAAGGATGATAGGAATTGGAGGAAAGGGATGCGAGTTAGGCTGCTTCTTAGATGCTCGCCAAGATCTGTTTTGAAGAGTAAGAGGTTGGAATTCGATGGGTTTCTAGAGGATAATGAGATTCTAAATTCTGAATCTGCTGAGGATTCTTCTCATCCAAACAATACTGATTATTTGGTTCTTCAGACTAATATCGAAGAGAATGGAGCGCTGGGATTAAAGAAAGGATGGGGAAGGGGACGCGGTGGCAAGGGAAGAGGACGAGGCTTGCTTGCTCTGCCATGTCAACCAAGCAGCCCTGTGGTTgGATGCGATGGATCAGTGCTTCTTGATGACACGGAAGAGATGAAAGGAGAGAAGAATGCAGGACCCAATAGGAATTCACTCAGAGGATTTGAAGTGATAGATAGCATTAAAGCTGAGCTTGAAGCCTACTGTCCCTCCACTGTCTCTTGTGCTGACATATTAGCCCTCGCTGCAAGAGACGCCGTTCTTCTCgCTGGAGGCCCATTCTGGGGCGTTGGATTAGGGAGACCAGATTCCTTAACAGCAAGTGAGGATGCAGCCAATCAACAGATTCCCTCTCCTTTCGAGCCTCTCCCAAACATTACTGCTAAGTTCACTTCCAAGGGTCTTGACTTGAAGGATGTTGTCGTCCTTTCAGgaGGACACACAATTGGTTTCGCGCAATGCTTCACGTTCAAAGGGAGACTGTTCAACTTCCAGGGCACGGGAAGAGCCGATCCGGCGCTGTCGTCGAACACCAAGCTTCTGTCTAACCTGCGAAGCATGTGTCCCGACCAGGACGCTTCCGACACGAACCTCGCCCCTCTCGACGGCGCCACGACGTTCAAGTTCGACAACGCCTACTACGCCAACCTCCTCGGCAACTCCGGCCTGCTTCTCTCCGACCATGCTCTTGTCTCCGATTCTGCCACCCTCCCTCTCGTCAGATACTACACCAATAACCGCTTTGCCTTCAATAATGACTTTTCGGCTTCCATGCTTAAGCTTAGTAGTCTCGGAGTTCTTACTGGCCACAACAATGGCCAAATCAGACTCAAATGTGGATCTgtcaattaa 1872 0.4519 MSQAQPLPEEKKNSNNNIQETTSSTTPNPSFKLNAQAPEFVPRSHAQMPISGYFYPFFQILGGAGASDWFYVGDQDPSSCLISTNNVALPTCSKNVLTHDLQQKIVKQVEYQFSDMSLLANESFLKQMNKDPEGYVPISIIASTKKVKSLTRNIHLLTQALRSSSKLVLSADGKKVKRKIPFTDKEKEELQSRTVVVENLPEDHSHENLLKIFSVVGSVKTIRICHPQESNSPRPKGDLFISNKIHALVEYETPYIAEKAVEKLKDDRNWRKGMRVRLLLRCSPRSVLKSKRLEFDGFLEDNEILNSESAEDSSHPNNTDYLVLQTNIEENGALGLKKGWGRGRGGKGRGRGLLALPCQPSSPVVGCDGSVLLDDTEEMKGEKNAGPNRNSLRGFEVIDSIKAELEAYCPSTVSCADILALAARDAVLLAGGPFWGVGLGRPDSLTASEDAANQQIPSPFEPLPNITAKFTSKGLDLKDVVVLSGGHTIGFAQCFTFKGRLFNFQGTGRADPALSSNTKLLSNLRSMCPDQDASDTNLAPLDGATTFKFDNAYYANLLGNSGLLLSDHALVSDSATLPLVRYYTNNRFAFNNDFSASMLKLSSLGVLTGHNNGQIRLKCGSVN 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0209 623 SUPERFAMILY Heme-dependent peroxidases 364 623 IPR010255 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 Pfam Ataxin-2 C-terminal region 30 45 IPR009818 -
Sto10g0209 623 MobiDBLite consensus disorder prediction 1 33 - -
Sto10g0209 623 ProSiteProfiles La-type HTH domain profile. 95 186 IPR006630 -
Sto10g0209 623 SUPERFAMILY RNA-binding domain, RBD 178 277 IPR035979 GO:0003676
Sto10g0209 623 Gene3D Peroxidase, domain 2 457 601 - -
Sto10g0209 623 PRINTS Plant peroxidase signature 353 373 IPR000823 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Plant peroxidase signature 393 406 IPR000823 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Plant peroxidase signature 412 422 IPR000823 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Plant peroxidase signature 431 446 IPR000823 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Plant peroxidase signature 478 490 IPR000823 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Plant peroxidase signature 540 555 IPR000823 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Plant peroxidase signature 556 573 IPR000823 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Plant peroxidase signature 596 609 IPR000823 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 SUPERFAMILY "Winged helix" DNA-binding domain 96 187 IPR036390 -
Sto10g0209 623 CDD secretory_peroxidase 364 622 IPR033905 GO:0004601|GO:0042744
Sto10g0209 623 PANTHER LUPUS LA PROTEIN-RELATED 11 363 IPR045180 -
Sto10g0209 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 278 IPR000504 GO:0003723
Sto10g0209 623 Pfam La domain 105 162 IPR006630 -
Sto10g0209 623 ProSitePatterns Peroxidases proximal heme-ligand signature. 479 489 IPR019793 -
Sto10g0209 623 ProSiteProfiles Plant heme peroxidase family profile. 364 623 IPR002016 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 CDD LARP_6 103 178 - -
Sto10g0209 623 Pfam Peroxidase 365 586 IPR002016 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 SMART la 99 179 IPR006630 -
Sto10g0209 623 PANTHER LA-RELATED PROTEIN 6C 11 363 - -
Sto10g0209 623 Gene3D - 98 184 IPR036388 -
Sto10g0209 623 Gene3D - 364 623 - -
Sto10g0209 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Sto10g0209 623 PRINTS Haem peroxidase superfamily signature 413 430 IPR002016 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Haem peroxidase superfamily signature 431 443 IPR002016 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Haem peroxidase superfamily signature 479 494 IPR002016 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 PRINTS Haem peroxidase superfamily signature 542 557 IPR002016 GO:0004601|GO:0006979|GO:0020037
Sto10g0209 623 CDD RRM_La_like_plant 193 280 IPR034878 GO:0003723
Sto10g0209 623 SMART rrm1_1 194 273 IPR000504 GO:0003723
Sto10g0209 623 MobiDBLite consensus disorder prediction 1 34 - -
Sto10g0209 623 Gene3D - 185 285 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0209 Sto-Chr10 1759199 1768301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0209 364 620 Peroxidase AT1G49570 62.646 5.20e-110 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0209 K15191 - gmx:100796786 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0209 10 1759199 1768301 Sto10g0209 10 1759199 1768301 ECH