Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0205 ATGGCTCAGCCAGCTTCCGACGGCGCCGATCTGAATCAGCAGCAGCCGCAGCAGTCGCAGCAGTGGACGCAGCCGCAGCCGCAGCAGCAGCAGTATCACCAGCAATGGATGACCATGCAGTATCCGGCTTCGGCTATGGCGATGATGCAGCAGCAGATGATGATGTATCCGCAGCATTACCTTCCTTACGTCCACCATTATCAGCCGCCTCATCACCAGCCGCCGCCGCCGCAGCACCAGCAGCACCAGCAGCAGCACTATCAGCAGGATGAGATCAGGACGATCTGGATCGGTGACCTTCATATTTGGATGGACGAGAACTATCTGCATAGCTGCTTTGCTCACACAGGCGAGGTATGGCAGTGTGATTCagcttctaaattcaagagcATCAGACTATCCAGTCTTGAGCATGTCTGTTCTGCCAAGGTTATACGAAATAAGCAAACTGGTCAGTCAGAGGGATATGGATTTGTTGAGTTTTATTCGCGTGCAACCGCTGAGAAAGTCTTGCAGAGCTATAATGGAACTACAATGCCAAACACAGATCAGCCATTCCGTCTAAATTGGGCAACATTCAGTTCGGGTGATAGGAGATCTGATTCTAGTTCTGATCTCTCTATATTTGTGGGGGACTTAGCTGTAGATGTTACTGATGCTATGCTACAGGAAACATTTGCTAGCAGATATTCATCTGTTAAGGGAGCAAAAGTCGTTTTTGATTCTAACTCCGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGCAGATGAAAATGAGAGATCCAGGGCAATGACTGAAATGAATGGTGTTTACTGTTCAAGTAGGCCAATGCGAATAGGGGTTGCAACACCCAAGAAATCATATGGACATCAACAACAATATTCTTCACAAGCTAATGGACATTCAGCCAATGGTGCTATGGCACAAGGTCCTCAGTCTGAAGGGAACTTTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAGTGATGAAGATCTCAGACAACCATTTTTGCAATATGGTGAGGTTGTCTCTGTGAAAATACCACTGGGaaaagggtgtggttttgttcAATTTGCTAACAGAAAGAACGCTGAGGACGCAATTCAAGCATTGAACGGGACCGTAATTGGAAACCAGACAGTGAGACTTTCTTGGGGACGCAGTCCTGGAAATAAGCAGTGGAGGACGGATTCCAATGGAGGAGGTCACTATGGAGGTCATGGCGGCTATGGTGTGAGACAGCATCAGGACACATGA 1272 0.4607 MAQPASDGADLNQQQPQQSQQWTQPQPQQQQYHQQWMTMQYPASAMAMMQQQMMMYPQHYLPYVHHYQPPHHQPPPPQHQQHQQQHYQQDEIRTIWIGDLHIWMDENYLHSCFAHTGEVWQCDSASKFKSIRLSSLEHVCSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQSYNGTTMPNTDQPFRLNWATFSSGDRRSDSSSDLSIFVGDLAVDVTDAMLQETFASRYSSVKGAKVVFDSNSGRSKGYGFVRFADENERSRAMTEMNGVYCSSRPMRIGVATPKKSYGHQQQYSSQANGHSANGAMAQGPQSEGNFNNTTIFVGGLDSDVSDEDLRQPFLQYGEVVSVKIPLGKGCGFVQFANRKNAEDAIQALNGTVIGNQTVRLSWGRSPGNKQWRTDSNGGGHYGGHGGYGVRQHQDT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0205 423 CDD RRM1_SECp43_like 94 193 - -
Sto10g0205 423 MobiDBLite consensus disorder prediction 296 316 - -
Sto10g0205 423 SUPERFAMILY RNA-binding domain, RBD 54 198 IPR035979 GO:0003676
Sto10g0205 423 MobiDBLite consensus disorder prediction 66 88 - -
Sto10g0205 423 MobiDBLite consensus disorder prediction 391 423 - -
Sto10g0205 423 Gene3D - 294 422 IPR012677 -
Sto10g0205 423 Gene3D - 193 293 IPR012677 -
Sto10g0205 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 285 IPR000504 GO:0003723
Sto10g0205 423 SUPERFAMILY RNA-binding domain, RBD 312 418 IPR035979 GO:0003676
Sto10g0205 423 SUPERFAMILY RNA-binding domain, RBD 190 306 IPR035979 GO:0003676
Sto10g0205 423 CDD RRM2_SECp43_like 208 284 - -
Sto10g0205 423 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 23 422 - -
Sto10g0205 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 182 IPR000504 GO:0003723
Sto10g0205 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 386 IPR000504 GO:0003723
Sto10g0205 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 277 IPR000504 GO:0003723
Sto10g0205 423 Gene3D - 92 192 IPR012677 -
Sto10g0205 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 193 IPR000504 GO:0003723
Sto10g0205 423 CDD RRM3_NGR1_NAM8_like 320 391 - -
Sto10g0205 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 393 IPR000504 GO:0003723
Sto10g0205 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 422 - -
Sto10g0205 423 SMART rrm1_1 322 389 IPR000504 GO:0003723
Sto10g0205 423 SMART rrm1_1 207 281 IPR000504 GO:0003723
Sto10g0205 423 SMART rrm1_1 94 189 IPR000504 GO:0003723
Sto10g0205 423 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0205 Sto-Chr10 1710945 1715131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0205 95 400 Eukaryotic Initiation Factors Gene Family AT4G34110 26.045 7.99e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0205 - - gmx:100814564 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0205 10 1710945 1715131 Sto10g0205 10 1710945 1715131 ECH