Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0199 ATGGTGGTTCCCAAGACAAAGATTACATACGAGGAATCGAGGCGTCAGAGGATGGAAGAGAACAAGAAGAGAATGGAACAGCTTAACCTCAACAAGCTTGCTTTTGCTTTAAAACCTTCCCCCAAGTCTTCTCCTGCTAAGCCCAGGTTGCCACGTCAGCCAGTGTCCCCTTCTTCTGTTCCAATAAGAAGGTCTAGTCGTGTTGCCAGCTTGCCTTCTCGAAGCTACAAGGAAGTCCCACTCGAACCCTTGAATTTGCAGAGACCAAGAAGGTCCTATCAAAGGAGGGACTTGCTAAATCGAGTTTATGCTTCAGATGAAGTTAGGCAATATGCAATTGAAAGAGCAGAAGAACTTCTTTCTGGTTTAGGTTCTGAATACCCTTGTTTTATCAAACCTATGCTCCAATCACATGTTACTGGAGGATTTTGGCTAGGTCTCCCACTTCATTTCTGCAAAAACCATCTCCCTCAATATGATGAAACAATAGATTTAATAGATGAGGATGGACAAGAGTCTCCAACCAAATACCTTGCTGATAGAACCGGTTTGAGTGGCGGTTGGCGAGGTTTCGCAATCGATCATGAACTAGTTGATGGGGATGCCTTGGTGTTTCAGTTGATCAAACCCACTAAATTTAAGGTGTTCATAATCAGAGCATATGAATCAGAAAAGGAGGAgaaaggagatgaagatgaagatttggatgccacacaattAAATAGGAGCTCTAAGAGAATCAGAGCAGGAAGAAGACAACTACGATACTTGTTTAGATCATGGGAACCAATACTAAAGGCAGATTCTGAAGTCGCTGTAGTGATTGGAATGCTCAATATATCAATTGCCATAAGAGATAAAGCCGGAAATCTAATTCTATTCTTCTTCCAATATTGCAACACATCCAAATCTTTAAACAATCCAAATTCAAGCTTTGCTTCTTCCAAGTATAGTTCCAATTGA 963 0.3977 MVVPKTKITYEESRRQRMEENKKRMEQLNLNKLAFALKPSPKSSPAKPRLPRQPVSPSSVPIRRSSRVASLPSRSYKEVPLEPLNLQRPRRSYQRRDLLNRVYASDEVRQYAIERAEELLSGLGSEYPCFIKPMLQSHVTGGFWLGLPLHFCKNHLPQYDETIDLIDEDGQESPTKYLADRTGLSGGWRGFAIDHELVDGDALVFQLIKPTKFKVFIIRAYESEKEEKGDEDEDLDATQLNRSSKRIRAGRRQLRYLFRSWEPILKADSEVAVVIGMLNISIAIRDKAGNLILFFFQYCNTSKSLNNPNSSFASSKYSSN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0199 320 SUPERFAMILY DNA-binding pseudobarrel domain 124 220 IPR015300 -
Sto10g0199 320 MobiDBLite consensus disorder prediction 1 25 - -
Sto10g0199 320 SMART B3_2 130 222 IPR003340 GO:0003677
Sto10g0199 320 Pfam B3 DNA binding domain 130 217 IPR003340 GO:0003677
Sto10g0199 320 Coils Coil 8 28 - -
Sto10g0199 320 MobiDBLite consensus disorder prediction 37 74 - -
Sto10g0199 320 ProSiteProfiles B3 DNA-binding domain profile. 130 221 IPR003340 GO:0003677
Sto10g0199 320 CDD B3_DNA 128 219 IPR003340 GO:0003677
Sto10g0199 320 Gene3D - 105 223 IPR015300 -
Sto10g0199 320 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 1 231 - -
Sto10g0199 320 MobiDBLite consensus disorder prediction 8 25 - -
Sto10g0199 320 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 231 IPR044837 -
Sto10g0199 320 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0199 Sto-Chr10 1648649 1653000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0199 5 244 B3 DNA Binding Superfamily AT3G19184 57.831 4.53e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto10g0199 B3 6.5e-14 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0199 10 1648649 1653000 Sto10g0199 10 1648649 1653000 ECH
Sto2g0614 2 5200513 5203173 Sto10g0199 10 1648649 1653000 ECH
Sto5g1203 5 8107982 8109913 Sto10g0199 10 1648649 1653000 ECH