Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0197 ATGGAGGACGAAGACGACCTCGAAGCCGTGTCCTGTTCTTCCGATTCCGATGATGATTACGCCGGCGAATGTGAACAAGGCCTCGATGAGGAGGATAGATTGGAAGCCGATTTGTTCTCTCCGCCCGATGACGAGCGGAAATCCAAGAATGTCGATGCTCTTGTCAGGGGCAACCTCGTTGTGAAGACACAGTCTTTGCTTCCACGGGTTCTTTCAGTAACAGCAGGAGCGGCTATTTGTAGAAAACCCTTTAAACCTCCCTGCTCCAATGGTTACAATGGTGGTAAAGAAGAACTTACACGTCGCCTTTGGGCTCGGAAAAAGTTTGTCCCATGGGGCTCCAACAGACCGGTATTGGTTGAAATTACCAACCACTTGAATACTCCAATAAACGTTGAAAAAGTTGTTCCCGAGGAGAAAGTGTCTTTGCCGCCTGGAATTGATCCTCTAGTGTTGTGGCAGCCTGAAGACTATGAGGATGGGGGTCATAATTTGACGCCAATAGAAGTGGACCCACTGCTTGTTCATTTCCTTAGACCACACCAGAGAGAAGGGGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTATGTACCACAGCAGATATTCATGGATGCATCCTGGCAGATGATATGGGTTTGGGAAAGACGTTGCAGTCAATCACATTACTGTATACACTTCTTTGTCAAGGGTTTGATGGAAAGCCAATGGTTAAAAAGGCCATAATTGTGACCCCTACCAGCCTTGTAAGCAACTGGGAAGCTGAAATTAAGAAGTGGGTTGGAGAAAGAATTCAGCTTGTCGCTCTTTGTGAAAGCACAAGAGATGATGTCATCTGTGGGATTGACAATTTTACAAGTCCCCACAGCTCTGTACGGGTGCTAATTGTTTCTTATGAGACATTCCGAATGCATTCATCAAAATTTAGCCATAGTGACTCTTGTGATCTACTAATATGTGATGAGGCTCACAGGCTGAAAAATGATCAGACAATAACAAACCGGGCATTGGCTGCACTCTCATGCAAACGTAGAGTATTGTTGTCAGGAACTCCTTTGCAGAATGACCTAGAAGAATTCTTTGCTATGGTTAACTTCACAAATCCTGGAATATTGGGTGACATTGCACATTTTCGTCGATACTTTGAAGCACCGATTATTGGTGGAAGGGAACCTACTGCCACTGCACAAGAGAAGAAGCTAGGTGCTGAACGCTCTGCAGAGTTAAGTGCAAAAGTTAACCAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTTCAGTCAGAcctatataaacattttatacaatCCAAAAATGTTAAACGGGCAATTGTTGAAGAAGTGAAGCAATCGAAGATTTTAGCCTATATAACAGCTCTCAAAAAGTTGTGCAATCATCCAAAGCTTATATATGATACCATACGAAGCGGGAGTCCAGGAACTTCAGGTTTTGAGGATTGCATTCGGTTCTTCCCATCAGAGATGTTATCGGGAAGATCTGGCTCATGGAATGGAGGGGGTGGAGCTTGGGTGGAATTGTCAGGGAAAATGCATGTCTTAGCAAGATTACTTGCCCAATTACGACAGAAGACCAATGACCGCATTGTCCTTGTTTCAAACTACACACAGACGCTGGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTATCCGCACTTGAGGCTTGATGGTAATACTTCAATCAATAAAAGGCAGAAGTTAGTCAACCACTTTAATGACCAATCCAAgGACCAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGCCTCAATTTAATAGGAGGAAATCGCTTAGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGGGTGTGGAGGGATGGGCAGAAGAAAAGAGTGTACATTTATAGATTTTTGAGTGCCGGGACAATAGAAGAAAAGGTCTACCAACGTCAGATGTCAAAAGAAGGGTTACAAAAAGTCATTCAGCAGGAGCAAACAGATAACATTGTGGCACAGGGTAACTTTCTTTCAACAGAAGAACTCCGCGATCTGTTCACATATCATGAAAGTGTCAATTCAGAGATTCATGAAAAGATGCAATGCGCTCGGTGCCAAACATATTATGATAGGCCTCAAAATACTGATGGAGAATATACAGCTCAATCAGAAGAAAATAACGGTGAATCTGATGAAGAAACTTCTGATATAGGTGGATTTGCAGAAATATCAGGCTGCTTACAAAAGTTAAAGAGATCAGAAAAGCAGGTAGGAACCCCCTTGGAAGAAGATTTACGTAGCTGGGGCCATCATTTTTTTCCAACGTCTGTACCAGATGCTATACTTCAGGCTTCAGCCGGAGATGAGGTGACCTTTGTTTTCACAAACCAAGTTAATGGAAAACTGGTACCGATTGATTCAACTGTAAGTCCAAAGCTACATCAAGAGGAATCTAGTAATGAACCACTGAAGCCAAAGCAGAACGTCAAATCAAATCCCTGTCTTTCTTTACATCAGAAGCTACCTCTGAAGTCTGCTTCTAGTGTTGCTGTAACATCATCGATCTCAACATCATCTGTCTCTACTAAGCCTTCAATGAAGTCAGCAATATTGAATTCTATTggaattaacaaaaatatatcatCAACAAATGCAGCTTTAAAGGCTGAAAACTCTCTTGTAAATCAATTACCACAAAAAAGATCATGTCCTGTATATGTCTttgatgaggatgaggatgatgatTTGGAATAA 2760 0.4156 MEDEDDLEAVSCSSDSDDDYAGECEQGLDEEDRLEADLFSPPDDERKSKNVDALVRGNLVVKTQSLLPRVLSVTAGAAICRKPFKPPCSNGYNGGKEELTRRLWARKKFVPWGSNRPVLVEITNHLNTPINVEKVVPEEKVSLPPGIDPLVLWQPEDYEDGGHNLTPIEVDPLLVHFLRPHQREGVQFMFECVSGLCTTADIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGERIQLVALCESTRDDVICGIDNFTSPHSSVRVLIVSYETFRMHSSKFSHSDSCDLLICDEAHRLKNDQTITNRALAALSCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYFEAPIIGGREPTATAQEKKLGAERSAELSAKVNQIVEVVCCKLTPLQSDLYKHFIQSKNVKRAIVEEVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPSEMLSGRSGSWNGGGGAWVELSGKMHVLARLLAQLRQKTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGNTSINKRQKLVNHFNDQSKDQFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNIVAQGNFLSTEELRDLFTYHESVNSEIHEKMQCARCQTYYDRPQNTDGEYTAQSEENNGESDEETSDIGGFAEISGCLQKLKRSEKQVGTPLEEDLRSWGHHFFPTSVPDAILQASAGDEVTFVFTNQVNGKLVPIDSTVSPKLHQEESSNEPLKPKQNVKSNPCLSLHQKLPLKSASSVAVTSSISTSSVSTKPSMKSAILNSIGINKNISSTNAALKAENSLVNQLPQKRSCPVYVFDEDEDDDLE 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0197 919 PANTHER SNF2/RAD54 FAMILY MEMBER 81 817 - -
Sto10g0197 919 MobiDBLite consensus disorder prediction 812 833 - -
Sto10g0197 919 SMART ultradead3 174 377 IPR014001 -
Sto10g0197 919 Pfam Helicase conserved C-terminal domain 521 629 IPR001650 -
Sto10g0197 919 MobiDBLite consensus disorder prediction 33 47 - -
Sto10g0197 919 MobiDBLite consensus disorder prediction 1 47 - -
Sto10g0197 919 Gene3D - 155 418 IPR038718 -
Sto10g0197 919 SMART helicmild6 546 630 IPR001650 -
Sto10g0197 919 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 519 680 IPR001650 -
Sto10g0197 919 CDD DEXHc_RAD54 178 416 - -
Sto10g0197 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 707 IPR027417 -
Sto10g0197 919 Pfam SNF2-related domain 181 470 IPR000330 GO:0005524|GO:0140658
Sto10g0197 919 CDD SF2_C_SNF 513 641 - -
Sto10g0197 919 Gene3D - 424 502 - -
Sto10g0197 919 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 369 IPR014001 -
Sto10g0197 919 Gene3D - 509 716 IPR027417 -
Sto10g0197 919 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 81 817 - -
Sto10g0197 919 MobiDBLite consensus disorder prediction 1 32 - -
Sto10g0197 919 MobiDBLite consensus disorder prediction 715 739 - -
Sto10g0197 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 414 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0197 Sto-Chr10 1624471 1631916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0197 510 688 RAD5 or RAD16-like Gene Family AT5G43530 36.111 6.43e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto10g0197 SNF2_N 3.2e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0197 K10875 - gmx:100781631 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0197 10 1624471 1631916 Sto10g0197 10 1624471 1631916 ECH