Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0176 ATGTCTGTTTCGGAGCTCAAAGAGCGTCATTTGGCAGCTACGGAGACCGTCAACACTCTCAAGGAGCAGTTAAAGCAGAGGCGTCAATCTTTGCTTGATACAGATATTTCTGGGTACGCTGGGTCTCAAGGTAAAACTCCTATCAGATTGGAACCTACGGATCTGGTTTGCTGTAGAACGTTGCAGGGTCACACAGGAAAGGCTATTGTGCTCAGAACTGTGTGGGAAAGATTGCACATTGAAACTGAAAGGAGGATGGGTGCGGAGAAGGGATTAGAAAAGAATGTGTATTCATTGGACTGGACTGCTGAAAAGAATCGAATTGTTAGTGCATCCCAAGATGGCCGATTAATAGTTTGGAATGCTCTAACAAGACAGAAAACTCATGCCATAAAGCTGCCTTGTGCATGGGTCATAACATGTGCTTTCTCACCCAGTGGTCAGTCTGTTGCATGTGGTGGTCTTGATAGTGTTTGCTCTATTTTCAATCTGAATTCAGCTACTGACAAGGATGGAAATCTGCCTGTTTCGCGGATGCTTAGTGGGCATAAGGGTTTGGTTTCCTCTTGTCAGTATGTTCCCGATGAAGATACTCATTTAATTACCGGTTCTGGTGATCAGACATGTGTTTTATGGGATATTACTACAGGCCTCAGAACATCTGTTTTTGGAGGTGAATTTCAATCTGGACATACTGCAGATGTACTTAGCATTTCAATTAATGGATCCAACTCAAGAATGTTTGTATCTGGATCTTGTGATGCAACTGCTCGATTGTGGGATACTCGTATGGCAAGTCGAGCAGTACGGACATTTCATGGGCATGAGGGCGATGTTAATTCTGTGAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGTTCAGAGGACGGAACTTGCAGATTGTATGACATTAGGACTGGACACCAACTTCAAGTATATTCTCAACACCATGGGGACAACGACATCCCGGGCGTGACCTCCATTGCATTTTCTATATCAGGAAGGCTTCTTTTTGCTGGATACACTAATGGTGATTGCTATGTTTGGGACACTTTATTGGCAAAGGcggttttgaatttaggatctCTCCAAAACTCTCATGAGGGCCGGATCAGCTGTTTAGGTTTGTCGGCCGATGGAAGTGCCTTGTGTACAGGAAGTTTTGACACAAACTTAAAGATATGGGCATTTGGAGGGCATAGAAGTGTGATTTGA 1218 0.431 MSVSELKERHLAATETVNTLKEQLKQRRQSLLDTDISGYAGSQGKTPIRLEPTDLVCCRTLQGHTGKAIVLRTVWERLHIETERRMGAEKGLEKNVYSLDWTAEKNRIVSASQDGRLIVWNALTRQKTHAIKLPCAWVITCAFSPSGQSVACGGLDSVCSIFNLNSATDKDGNLPVSRMLSGHKGLVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRMASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLYDIRTGHQLQVYSQHHGDNDIPGVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKAVLNLGSLQNSHEGRISCLGLSADGSALCTGSFDTNLKIWAFGGHRSVI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0176 405 PIRSF GNBP_B 1 82 - -
Sto10g0176 405 PIRSF GNBP_B 76 399 - -
Sto10g0176 405 ProSitePatterns Trp-Asp (WD) repeats signature. 200 214 IPR019775 -
Sto10g0176 405 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Sto10g0176 405 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Sto10g0176 405 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 405 - -
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 222 IPR001680 GO:0005515
Sto10g0176 405 SUPERFAMILY WD40 repeat-like 89 396 IPR036322 GO:0005515
Sto10g0176 405 SMART WD40_4 82 121 IPR001680 GO:0005515
Sto10g0176 405 SMART WD40_4 265 304 IPR001680 GO:0005515
Sto10g0176 405 SMART WD40_4 124 163 IPR001680 GO:0005515
Sto10g0176 405 SMART WD40_4 307 351 IPR001680 GO:0005515
Sto10g0176 405 SMART WD40_4 173 213 IPR001680 GO:0005515
Sto10g0176 405 SMART WD40_4 220 261 IPR001680 GO:0005515
Sto10g0176 405 SMART WD40_4 357 397 IPR001680 GO:0005515
Sto10g0176 405 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 76 IPR016346 GO:0007165
Sto10g0176 405 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 91 401 IPR016346 GO:0007165
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Sto10g0176 405 PRINTS Beta G protein (transducin) signature 89 105 IPR001632 -
Sto10g0176 405 PRINTS Beta G protein (transducin) signature 108 122 IPR001632 -
Sto10g0176 405 PRINTS Beta G protein (transducin) signature 127 142 IPR001632 -
Sto10g0176 405 PRINTS Beta G protein (transducin) signature 145 162 IPR001632 -
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 270 IPR001680 GO:0005515
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 396 IPR001680 GO:0005515
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Sto10g0176 405 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 76 - -
Sto10g0176 405 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 91 401 - -
Sto10g0176 405 Coils Coil 3 23 - -
Sto10g0176 405 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Sto10g0176 405 Pfam WD domain, G-beta repeat 367 396 IPR001680 GO:0005515
Sto10g0176 405 Pfam WD domain, G-beta repeat 95 121 IPR001680 GO:0005515
Sto10g0176 405 Pfam WD domain, G-beta repeat 310 351 IPR001680 GO:0005515
Sto10g0176 405 Pfam WD domain, G-beta repeat 229 261 IPR001680 GO:0005515
Sto10g0176 405 Pfam WD domain, G-beta repeat 178 213 IPR001680 GO:0005515
Sto10g0176 405 Gene3D - 72 397 IPR015943 GO:0005515
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 308 - -
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 121 - -
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 263 - -
Sto10g0176 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 217 - -
Sto10g0176 405 CDD WD40 90 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0176 Sto-Chr10 1446594 1451100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0176 150 351 U-box Gene Family AT1G04510 27.273 1.17e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0176 K04536 - cpap:110813734 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0176 10 1446594 1451100 Sto10g0176 10 1446594 1451100 ECH