Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0174 ATGTCCTCGGTAGTCTCCGACGATTCCTCCTCCACCAATAATGCTCTGCATGAACTCGCGAACTCCACTCCTTTTCTCGGCGTGAAACTCTACATCCTCATATGCGCCTTTCTCTTGATCCTCGCGGTTTTACTTCTCCTGATCTTCCTCTGCATTCGCCGGAATCGGAATCGGAATCGGACTCGGAGTTCGACGTTGACGACGAAGCCTAAAAGGCTAGCGAAGCACAGCTCCGGCACAATTCCGTTGGTATCGAAGGAGATCGTGGAGGTTAAAGCCTTGGATCTCGATCTTCTCAGAATAGGAGACGGCGATTTCAGGAAAGAGGAGGACGCGGAAGCAGAGGAGATCGGCGGAAGGAAGAGCAGTGAAGAgagtgatgacgtggcggtGGTGGAGGCGCCGAATATAGGGTGGGGCCGTTGGTATAGCTTGGAGGAGCTCACGCGTGCGACACGTGGCTTCGCCGATGAGAATGTGATCGGAGAAGGAGGGTATGGGATTGTGTACAGAGGAGTTCTTCAGGATGGCTCCGTGGTAGCTGTCAAGAATCTTCTCAACAACAAGGGTCAAGCCGAAAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAagcaaaacataaaaatttggtAGGTTTAGTCGGATATTGTGCAGATGGTGCTCAAagGATGCTTGTCTATGAATATGTTGACAATGGAAACTTGGAGCAGTGGTTGCATGGTGAAGTAGGGCCTGTTAGCCCCTTAACATGGGATATACGAATGAAAATTGCCATAGGCACAGCAAAAGGGCTAGCCTATTTGCATGAAGGGTTAGAACCCAAAGTTGTGCACCGAGATGTGAAGTCTAGTAACATTCTTCTGGACAAAAGATGGAATGCCAAAGTATCAGACTTTGGATTGGCCAAACTCTTAGGATCTGAGAAGAGCTATGTTTCTACACGTGTCATGGGGACCTTTGGATATGTTTCGCCTGAGTATGCGAGCACTGGTATGCTCAATGAAGGCAGTGATGTGTATAGCTTTGGAATTCTACTAATGGAGATAATCACTGGAAGAAGTCCCATTGATTATTCTAGACCACCAGCAGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTAGCAAGTCGGCGAGGCGATGAGCTAGTCGATCCTTTGATCGAGATTCAACCTAATCCGAGATCTTTGAAACGAGCTTTGCTTGTTTGTCTGCGCTGCATAGATATGGATGTCAGTAAGCGACCAAAGATGGGTCAAATTGTTCATATGATTGAGGCAGATGATTTCCCTTTCCGTTCTGAACTTCGTCCAACTAGAGAGAAAGATCCTGTACCTCCTCGTGCAGCAGCATTTTCCAGTAAAATTTCATATCCACCAAAGCATGTGGAGTCAACAGAAAGATCAAGAAGGAGATGA 1422 0.4599 MSSVVSDDSSSTNNALHELANSTPFLGVKLYILICAFLLILAVLLLLIFLCIRRNRNRNRTRSSTLTTKPKRLAKHSSGTIPLVSKEIVEVKALDLDLLRIGDGDFRKEEDAEAEEIGGRKSSEESDDVAVVEAPNIGWGRWYSLEELTRATRGFADENVIGEGGYGIVYRGVLQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKAKHKNLVGLVGYCADGAQRMLVYEYVDNGNLEQWLHGEVGPVSPLTWDIRMKIAIGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKRWNAKVSDFGLAKLLGSEKSYVSTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMEIITGRSPIDYSRPPAEMNLVDWFKGMVASRRGDELVDPLIEIQPNPRSLKRALLVCLRCIDMDVSKRPKMGQIVHMIEADDFPFRSELRPTREKDPVPPRAAAFSSKISYPPKHVESTERSRRR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0174 473 CDD STKc_IRAK 161 427 - -
Sto10g0174 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Sto10g0174 473 ProSiteProfiles Protein kinase domain profile. 155 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g0174 473 Gene3D Phosphorylase Kinase; domain 1 111 230 - -
Sto10g0174 473 MobiDBLite consensus disorder prediction 434 473 - -
Sto10g0174 473 Gene3D Transferase(Phosphotransferase) domain 1 231 435 - -
Sto10g0174 473 SMART serkin_6 155 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g0174 473 SUPERFAMILY Protein kinase-like (PK-like) 139 445 IPR011009 -
Sto10g0174 473 PANTHER OS01G0323000 PROTEIN 9 443 - -
Sto10g0174 473 Pfam Protein kinase domain 156 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g0174 473 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Sto10g0174 473 PANTHER OS03G0227900 PROTEIN 9 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0174 Sto-Chr10 1429560 1432505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0174 11 429 Trihelix Transcription Factor Family AT1G70460 40.416 1.72e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sto10g0174 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0174 - - gmx:100779420 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0174 10 1429560 1432505 Sto10g0174 10 1429560 1432505 ECH
Sto2g0703 2 5991241 5994666 Sto10g0174 10 1429560 1432505 ECH
Sto5g1173 5 7872836 7875409 Sto10g0174 10 1429560 1432505 ECH
Sto9g3543 9 34440227 34442486 Sto10g0174 10 1429560 1432505 ECH