Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0169 ATGTTGCGCTGTCTGAACAGTTCGGAGAATTTCGCCGGCACCTGCTCGGAGATGACGGTGTTAGAAAGGCAAAGAGAAAGGATGAAAtggcaacaacaacaacaacagcaACAGCATCATCATCAGCCGAACCAGAGCTACTTTTGCGGAGGTGGATTCGACGGTGCGTTCTCGTCTCTGCAGGTTCCGAATTCCCAGGGTTtgagaatgatgatgatgatgaatggcGCCGGCGCCGGTACCGGAGACGGTTCTGGGCTTGGCGAGGTGGTTGCTAATGCTAATGTCAATGTTAATGTTGGTTCGTTGAAGCCCGACCCGGGTTCGGAAAACGGGTGGCCCGAATTGAGTAAGTTCGAGCTGCCGAATTTGGGATTCGTGTCTTCTGGATTTGATGCGAACTCTACAATTTCGAGGACTTCTAGCTGCCCGCCGTCTGTGGCGCCGGCGACTGGACTCGCCGATGCCAAGGGGAAAGAGTCAGTTGTTGCAGAAAATGAGAACACTAACAAGAAGAACAAAGCAAGTGGTGAGGAAGAAGAATCCAAAATCaccacaaataataataataataataatatcaacaACAGAGAAACTTCAGCAGATTCTTCCAAGGAGAATTCAAAAGCTTCTGAGGTTCAAAAGCCTGACTACATTCATGTTCGAGCACGTCGTGGTCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTACTTGCAAGATTTAGTGCCTGGTTGTAACAAAATCACAGGGAAAGCTGGCATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTAGAGTTCCTGTCAATGAAATTAGCTGCTGTAAACCCAAGGATTGACTTCAACATTGATGATCTGTTTACCAAAGAGGTTTTTCCTACTTGTGCTCCGACGAGTTTTCCAACCATAGAGATGACACCTAATCCTGCCTATCTTCAATTTGATTCAGCACAACATGCTGCTTCATGTTGTGGGTTAGATATGGGACTTAACCCTCCAGATATGGGGCTTCGAAGGACCATTAGTGCCCCTGTATCCATGCCTCCCGAAACGTTTCTTGACACATCCTGTTTCACTCAAATTCTGCCATTTTCAACTTGTGAAGCTGATTTGCAAAACCTTTACAATGTGGCTTTTGATCAAGCAAGATCAACAACGTCCTATCCTTCTCAGCCATTCACAGAAAGACAGACCTTTTGTGTTTCCAACACCAAATATTGTGACCTTGTCCCTAGGAGGAGCCTTCAAGCTGGGTTGAACAAGAGAAGGAAGCAAAAGGCTCGCGAAGAAGTTGCAAGAGATGCAAGTATATGGAATGCCTTCAGCCTCCAAGAGACGCCGGATTTCGGCTTTGTGTTTATAGAAATTATAGCCGGCATCAAGAAAAGTTATTTTAACCTGGTCAGGATCTGCTCCAAATTCTGA 1473 0.4338 MLRCLNSSENFAGTCSEMTVLERQRERMKWQQQQQQQQHHHQPNQSYFCGGGFDGAFSSLQVPNSQGLRMMMMMNGAGAGTGDGSGLGEVVANANVNVNVGSLKPDPGSENGWPELSKFELPNLGFVSSGFDANSTISRTSSCPPSVAPATGLADAKGKESVVAENENTNKKNKASGEEEESKITTNNNNNNNINNRETSADSSKENSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRIDFNIDDLFTKEVFPTCAPTSFPTIEMTPNPAYLQFDSAQHAASCCGLDMGLNPPDMGLRRTISAPVSMPPETFLDTSCFTQILPFSTCEADLQNLYNVAFDQARSTTSYPSQPFTERQTFCVSNTKYCDLVPRRSLQAGLNKRRKQKAREEVARDASIWNAFSLQETPDFGFVFIEIIAGIKKSYFNLVRICSKF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0169 490 MobiDBLite consensus disorder prediction 30 45 - -
Sto10g0169 490 CDD bHLH_AtBPE_like 217 302 - -
Sto10g0169 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 277 IPR011598 GO:0046983
Sto10g0169 490 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 164 403 IPR024097 GO:0006355
Sto10g0169 490 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 166 IPR024097 GO:0006355
Sto10g0169 490 MobiDBLite consensus disorder prediction 182 201 - -
Sto10g0169 490 MobiDBLite consensus disorder prediction 160 181 - -
Sto10g0169 490 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 164 403 - -
Sto10g0169 490 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 16 166 - -
Sto10g0169 490 SMART finulus 233 283 IPR011598 GO:0046983
Sto10g0169 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 296 IPR036638 GO:0046983
Sto10g0169 490 Pfam Helix-loop-helix DNA-binding domain 231 278 IPR011598 GO:0046983
Sto10g0169 490 MobiDBLite consensus disorder prediction 202 217 - -
Sto10g0169 490 Coils Coil 18 38 - -
Sto10g0169 490 Gene3D - 224 297 IPR036638 GO:0046983
Sto10g0169 490 MobiDBLite consensus disorder prediction 26 45 - -
Sto10g0169 490 MobiDBLite consensus disorder prediction 137 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0169 Sto-Chr10 1364898 1371154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0169 146 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 56.923 1.13e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g0169 HLH 2.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0169 - - tcc:18607768 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0169 10 1364898 1371154 Sto10g0169 10 1364898 1371154 ECH
Sto10g0169 10 1364898 1371154 Sto6g3805 6 42686503 42687850 ECH