Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0138 ATGCAGCTCGTTCAGCTCATCATTCCCATGGAGTCCGCTCACCTTACTGTCTCCTATCTCGGCGAACTCGACCTTCTTCAGTTCAAAGATCTCAATGCAGAGAAGAGCCCTTTTCAACGGACTTATGCTGGTCAGCTCATGCGCCACTCCGTTTGCCTCACGGTATGTGTGCTCCAAGCTCACCAACCTATTATTCTTCAGCAAATGGCGGATCTTGTTGACAACGGGAGGCAGAACGTGATGCTCGTCGCTACCAGATCTGATGAGGCTAAGGGCTTCCATCGAATCGGACTCAATGATAAGGTGATTGATCTTCAAATCTCGAGCCACCTCCAGACTAGCGAGAATACCATGGATCTCGGTACAGAGAGCATTTCCTTTCCCAATCTTCTTCACAAAACCGATAATCCAACTCCCATTGTTATCCCGGAGGACTGCTCTGGAGCCCGCCGTGTTATCATCGGGATTCCAAGCTCCGTCGACGTTGAACTTCATCCAACCACGATCAGTAAGGGGCGGAAGGAGGACTTCAGCGCAGCGATCTTGAAGCTTAAGAATGTGCCAAATCGGCTAGTTGTTGATGACGCCGTCAAGGATGATAACTCCTCTGTCGCACTTCATCCAGAGACGATGGAAAAACTCAAAATGGTTCACGGGCACACAATTTTGATTAAGGGAAAGGGAAGGAAAGATACAATCTGTTTTGTACTTGCTGATGTCACATGTGAGGAaccaaaaataagaataaacaaggTTGTAAGAAACAACCTGAGGGTCAAGCTCGGAGATGTTGTTTATGTGCATCAATATGCTGATGTCGAATATGGAAAGCAAGTCCACATTCAGCCTCTGGATGACACTATTGAAGGGGTAACGGAAAACCTCCTTAATGCATATTTAAAACCTTATTTTCGGAATGCATATCGTCCTATGAGGAAGGGTGACTTGTTCCGTGTGAGAAAGGGGATGAGAAGTGTAGAATTCAAGGTTATTGAAACTTATCCTTCTGAGTATTGTGTTGTGGGACCGGATACTAAAATCTCTTGTGGAGAGCCTGTGAAAAGGGAAAATGAGGATCAATTAGATGACTTTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGGTGGCTCAGATTCAAGAATTGGTGGAATTTCCATTGAGGCATCCACAGTTATTCAAGTCTATCGGTGCTAAGCCACCCAAAGGAATTTTGCTGTATGGGCCTCCTGGGTCTGGTAAGACTTCAATTGCTCGAGCAGTTGCAAATGAAGCTGGTGCCTTCTTTTTCTCCTTTAATGGACAGGAGATTATGTCAGATTATAAAAGTGAAAGCAGTCTATGGAAGGCATTTGAGACAGCAGAAAAGAAGGCGCCATCTATTATCTTCATTGATGAGATTGATTCAATTGCCCCGAACCGGGAGAAGACTCGTAGAGAAAGTAGGAGGAGCATTGTTTCCCAACTGTTGAAGCTTATGGACAGGTCAAAATCGGGTGGACACGTAATCGTTATTGGAGCCACAAATCATCCCAACAGCATTGACCCTGCGCTTAGAAGGTTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTTCCAGATGAAGATGGTCGTCTTGAGGTTGATTTGGAAAATATTTCTAAGAACACCCATGGCTATGTTGGTGCTGACCTTGCTGCTTTATGTGCTGAAGCTGCACTAGAATGCATCAGAGAGAAAATGAATTTGATTGACCTGGAAGACAAGACAATTGATGCTGAGATACTTAAGTCAATGGCAGTGACAAATGAGCATTTCCAGAATGTTCTTGGATCTAGCAATCTTTGTGCTCTCCGCAAGAATGTTGTTGAAGTGCCCAAAGTCAGCTGGGAATATATTGGAGGCCTTGAGAATGTTAAGAGAGAACTCCAAGAGACTATTCAATATCCAGTGGAATACCCTGAAAAATTCGAAAAGTTTGGAATGTCCCCATCAAAGGGTGTTCTCTTCTATGGTCCTCCTGGATGTGGTAAGACACTTTTGGCTAAAGCTATTGCCAATGAATGCCAGGCGAACTTCATCAGTGTTAATGGTCCTGAACTACTAACAAAGTGGTTTGGAGAAAGTGAGGCTAATGTCCGTGAAATATTTAACAAGGCCCGTGGTTCTGCTCCATGTGTCCTCTTCTTTGATGAAATTGACTCAATTGCAGTTCAGAGGGGTCGTCATCCAGGAGATTGTGGAAGTGCTGAAAGGGTTGTGAACCAACTTCTTACAGAAATGGATGGAATGTCAGCTAAGAAAAATGTGTTTATCATTGGTGCCACTAATCAACCAGAGATTATAGATCCTGCAATTCTGCGACCTGGTCGTTTAGACAAGTTGATTTATATCCCCCTCCCAGATGAGGAATCCcgctatcaaatatttaaatctTGCCTAAGAAAATCCCCCGTTGCAAAGGATGTTAATCTTAGAGCTCTAGCCAAGTATACTCAAGGTTTTAGTGGTGCTGATATTACTGAGATTTGCCAGTGTGCATGCAAGTATGCTATAAGAGAGGACATTGAAAAGGACATtgaaagagaaaggagaagaacCGAGAATCCCGAGGCCAAGGAGAATGTTGAGGATGATGTAGCAGAAATCACAGCAGCTCATTTTGAGGAGTCGATGAAGTATGCACGAAGGAGTGTAAGTGATGCTGACATTGGCAAGTACCAGTCATTTGCCCAAACATTACAGCAGTCAAAAGGGTTTGGAACTGAGTTGAGTATGATATGGCAATGGAGGAATAGGATGTGTAAAGAAAACAACTTCAGTATGCCTATGGAGCCACAAAGGATCATTCTACATCATGCTAAGACGTTCATGAAAGCCTGGGATTGGAAAGAGTGTAACATGCCTAATCATGAATGGGTGAAAATTAACACGGATGGAGCAGTATGTAGAGCTTCAAGGTTAGCGGGGTGTGGTGGTATTTTTAGAGATGATCAAGGAAGTTGGAAGCTGGGTTTCATTGCCAAAATTGGCACTTCAACTGTACTTGGAGAAGAATTGTGGGGCATTTATTATGGGTTAAAGACTGCTTGGGGAAAAGGCCTAAAGAAGGTGATTATTGAGTGTGACTCTAAGAAGGTCGTTGCACAAGTTAAGGGGAACAATTTGAAAGACAGAACTGAACACCCTATTTTGTGTCAAATTAGAGACTTCACTAGGAGAGATTGGGATATTCAAATCAAGCTCATCTCCAGATTTGCAAACCGTTGTGCTGGCATGCTAGCAAAGGATAACCTTTTAAAATCTAGAGGCTTTTACTTGTTAGACCTTTGA 3312 0.4275 MQLVQLIIPMESAHLTVSYLGELDLLQFKDLNAEKSPFQRTYAGQLMRHSVCLTVCVLQAHQPIILQQMADLVDNGRQNVMLVATRSDEAKGFHRIGLNDKVIDLQISSHLQTSENTMDLGTESISFPNLLHKTDNPTPIVIPEDCSGARRVIIGIPSSVDVELHPTTISKGRKEDFSAAILKLKNVPNRLVVDDAVKDDNSSVALHPETMEKLKMVHGHTILIKGKGRKDTICFVLADVTCEEPKIRINKVVRNNLRVKLGDVVYVHQYADVEYGKQVHIQPLDDTIEGVTENLLNAYLKPYFRNAYRPMRKGDLFRVRKGMRSVEFKVIETYPSEYCVVGPDTKISCGEPVKRENEDQLDDFGYDDVGGVRKQVAQIQELVEFPLRHPQLFKSIGAKPPKGILLYGPPGSGKTSIARAVANEAGAFFFSFNGQEIMSDYKSESSLWKAFETAEKKAPSIIFIDEIDSIAPNREKTRRESRRSIVSQLLKLMDRSKSGGHVIVIGATNHPNSIDPALRRFGRFDREIDIGVPDEDGRLEVDLENISKNTHGYVGADLAALCAEAALECIREKMNLIDLEDKTIDAEILKSMAVTNEHFQNVLGSSNLCALRKNVVEVPKVSWEYIGGLENVKRELQETIQYPVEYPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVNGPELLTKWFGESEANVREIFNKARGSAPCVLFFDEIDSIAVQRGRHPGDCGSAERVVNQLLTEMDGMSAKKNVFIIGATNQPEIIDPAILRPGRLDKLIYIPLPDEESRYQIFKSCLRKSPVAKDVNLRALAKYTQGFSGADITEICQCACKYAIREDIEKDIERERRRTENPEAKENVEDDVAEITAAHFEESMKYARRSVSDADIGKYQSFAQTLQQSKGFGTELSMIWQWRNRMCKENNFSMPMEPQRIILHHAKTFMKAWDWKECNMPNHEWVKINTDGAVCRASRLAGCGGIFRDDQGSWKLGFIAKIGTSTVLGEELWGIYYGLKTAWGKGLKKVIIECDSKKVVAQVKGNNLKDRTEHPILCQIRDFTRRDWDIQIKLISRFANRCAGMLAKDNLLKSRGFYLLDL 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0138 1103 Gene3D - 610 793 IPR027417 -
Sto10g0138 1103 Pfam Reverse transcriptase-like 970 1090 IPR002156 GO:0003676|GO:0004523
Sto10g0138 1103 SMART AAA_5 657 795 IPR003593 -
Sto10g0138 1103 SMART AAA_5 400 534 IPR003593 -
Sto10g0138 1103 Gene3D - 532 609 - -
Sto10g0138 1103 Pfam ATPase family associated with various cellular activities (AAA) 404 531 IPR003959 GO:0005524|GO:0016887
Sto10g0138 1103 Pfam ATPase family associated with various cellular activities (AAA) 661 793 IPR003959 GO:0005524|GO:0016887
Sto10g0138 1103 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 408 427 - -
Sto10g0138 1103 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 1023 1041 - -
Sto10g0138 1103 Gene3D - 369 531 IPR027417 -
Sto10g0138 1103 CDD RNase_H_like 969 1089 IPR044730 -
Sto10g0138 1103 Gene3D - 168 272 - -
Sto10g0138 1103 CDD AAA 391 531 - -
Sto10g0138 1103 ProSitePatterns AAA-protein family signature. 502 520 IPR003960 GO:0005524|GO:0016887
Sto10g0138 1103 ProSitePatterns AAA-protein family signature. 763 781 IPR003960 GO:0005524|GO:0016887
Sto10g0138 1103 Gene3D - 965 1092 IPR036397 GO:0003676
Sto10g0138 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 905 IPR027417 -
Sto10g0138 1103 SUPERFAMILY Cdc48 domain 2-like 272 363 IPR029067 -
Sto10g0138 1103 Pfam Cell division protein 48 (CDC48), N-terminal domain 190 271 IPR003338 -
Sto10g0138 1103 SMART CDC48_N_2 190 273 IPR003338 -
Sto10g0138 1103 SMART CDC48_2_2 290 356 IPR004201 -
Sto10g0138 1103 Gene3D - 273 368 - -
Sto10g0138 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 604 IPR027417 -
Sto10g0138 1103 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 168 922 - -
Sto10g0138 1103 PANTHER AAA-FAMILY ATPASE 168 922 - -
Sto10g0138 1103 CDD AAA 627 793 - -
Sto10g0138 1103 Gene3D - 797 904 - -
Sto10g0138 1103 SUPERFAMILY Ribonuclease H-like 966 1092 IPR012337 -
Sto10g0138 1103 SUPERFAMILY ADC-like 187 269 IPR009010 -
Sto10g0138 1103 Pfam Cell division protein 48 (CDC48), domain 2 293 351 IPR004201 -
Sto10g0138 1103 Pfam AAA+ lid domain 541 581 IPR041569 -
Sto10g0138 1103 Pfam AAA+ lid domain 815 855 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0138 Sto-Chr10 1086561 1101925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0138 591 852 Calmodulin-binding Proteins AT3G56690 45.038 1.11e-71 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0138 K13525 - gmx:100791603 1173.69