Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0134 ATGGAGGCTTCTGTTTTCTGTGCTGCAGATGAAGCTGCTCTCTGCCATGCCTGTGATTCTACCATCCACCATGCCAATAAGCTTGCTGGCAAACACCAACgcttctctcttcatcttcccACTTCTCAAGATTTCCCTCTTTGTGATATCTGCCAGGAAAAGAGAGCATATGTATTCTGTAAAGAAGACAGAGCAATACTATGCAGAGAATGTGACCTTACAATTCACAGTGCCAATGAACACACTCAGAAACACAATAGGTTTCTTCTCACAGGAGTGAAGCTCTCTGCTTCTTCTTTAGACCCATCTGCTTCATCTTCctccaattataataataataatgggtcATGTGGTTCTAACAACACATACACTAATGAGAATTTGAGTTGTTCCAATATTTCTGATACAGAAGCAGTTTCAGTTTCAACAAGCAGCTTCTCAGAGTACTTGATTGAGACAATTCCTGGTTATTGCTTTGAAGATCTTCTCATTGATGCTTCATTTCCACCACCTAATGGTTTCTGTAAGAATGAGGAGCATCATCCAAGATCTCAAGATCAAAATTTTcaaGTCACCAAGAATAGAGCTGAGGGTGAAGGCTGTATCCCTAGATGGTGGAGGTCACGTTGGGGCGTGATATGGATGCAGACTGCTCTTAGTAGTAGGAAGTCGTAA 675 0.3896 MEASVFCAADEAALCHACDSTIHHANKLAGKHQRFSLHLPTSQDFPLCDICQEKRAYVFCKEDRAILCRECDLTIHSANEHTQKHNRFLLTGVKLSASSLDPSASSSSNYNNNNGSCGSNNTYTNENLSCSNISDTEAVSVSTSSFSEYLIETIPGYCFEDLLIDASFPPPNGFCKNEEHHPRSQDQNFQVTKNRAEGEGCIPRWWRSRWGVIWMQTALSSRKS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0134 224 SMART bboxneu5 1 37 IPR000315 GO:0008270
Sto10g0134 224 SMART bboxneu5 43 90 IPR000315 GO:0008270
Sto10g0134 224 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Sto10g0134 224 CDD Bbox1_BBX-like 3 37 - -
Sto10g0134 224 PANTHER B-BOX ZINC FINGER PROTEIN 21 2 193 - -
Sto10g0134 224 Gene3D Classic Zinc Finger 1 90 - -
Sto10g0134 224 Pfam B-box zinc finger 46 82 IPR000315 GO:0008270
Sto10g0134 224 ProSiteProfiles Zinc finger B-box type profile. 1 37 IPR000315 GO:0008270
Sto10g0134 224 CDD Bbox1_BBX-like 47 90 - -
Sto10g0134 224 PANTHER B-BOX ZINC FINGER PROTEIN 22 2 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0134 Sto-Chr10 1036050 1039115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0134 2 163 C2C2-CO-like Transcription Factor Family AT4G39070 51.309 4.11e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto10g0134 zf-B_box 6.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0134 - - gmx:100800981 238.81