Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0124 ATGGAGGTTGCTGTAGCGAAAGCGTTGAAACCTAGTTTAAGAGGAGAATTGGCGTTTCAGCAGAAAGCGTTTTGCGATGAAATCTTGTGCTTCAATGCAAACAACGCTGCTTCCGGCGACGATTTCTCCGTGGACGACCTCCTCGACTTCTCCAACGGCGAATTTCACCATGGATTTCTTGAGAACGCACATGATTTcgaggaggaggaggacgaCGACGACAAGGACGGTTCCTCTCTTTCCGACGACGTTAACTCTAATTCCGGTAGCGTTTCCGTCGCCGGAGACTCCGACTCCGCTTTCGCCAGCGAACTCGCCGTTCCGGCTGATGATTTAGCAGACTTGGAATGGGTTTCTCGCTTTGTGGACGATTCTCTGCCGGAGCTCTCTCTTTTGTACCCGGTTCGTTCAGAGCAAGCCAAGACGTTGCCGGAAAAGCGGTCTGAACCGAAAGCTAGACCGTTATTAGCGAAAACTCCTGGTTTTCCCTTCGAAATTCCGAAGAAAACGAGAAGCACCAAATCCAGAAAAGCCAACGCTCGCGCCTGCTCCCTCAGCCTCTTGCTTTCTCATTCCCGGCCATCGTCACCGCCGCCGTTGTCATTGTCGTCGTCCTCATCCTCTCCCGGCTTTTCCTCGCCTCCGGCTCTCACCGTCGCCGGTGAGCCGCCGGCGAAGAAGCAGAAGCATAATAAGAAGAAGCCGTCGGACGGTGAAGCGGGTGGGTCCCAGTTTCAGCGTCGCTGCACCCATTGTCACGTGCAGAAAACGCCACAGTGGAGAACCGGTCCACTAGGTGCCAAAACCCTTTGTAATGCATGTGGTGTCCGGTTCAAGTCCGGTCGGCTCTTCCCAGAGTATAGACCGGCATGTAGCCCAACCTTCTCCAGCGAAATTCATTCAAATAGCCATCGCAAAGTGTTAGagatgaggaggaggaaggaGACCTCTGGACCGGAGGCCGGTCCAACCCAAACACAAATAGTTCAGAGCTACTAA 999 0.5145 MEVAVAKALKPSLRGELAFQQKAFCDEILCFNANNAASGDDFSVDDLLDFSNGEFHHGFLENAHDFEEEEDDDDKDGSSLSDDVNSNSGSVSVAGDSDSAFASELAVPADDLADLEWVSRFVDDSLPELSLLYPVRSEQAKTLPEKRSEPKARPLLAKTPGFPFEIPKKTRSTKSRKANARACSLSLLLSHSRPSSPPPLSLSSSSSSPGFSSPPALTVAGEPPAKKQKHNKKKPSDGEAGGSQFQRRCTHCHVQKTPQWRTGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNSHRKVLEMRRRKETSGPEAGPTQTQIVQSY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0124 332 ProSiteProfiles GATA-type zinc finger domain profile. 243 279 IPR000679 GO:0006355|GO:0043565
Sto10g0124 332 MobiDBLite consensus disorder prediction 81 95 - -
Sto10g0124 332 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Sto10g0124 332 Pfam GATA zinc finger 249 282 IPR000679 GO:0006355|GO:0043565
Sto10g0124 332 PIRSF Txn_fac_GATA_plant 14 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto10g0124 332 MobiDBLite consensus disorder prediction 177 214 - -
Sto10g0124 332 MobiDBLite consensus disorder prediction 302 318 - -
Sto10g0124 332 Gene3D - 241 317 IPR013088 GO:0006355|GO:0008270
Sto10g0124 332 MobiDBLite consensus disorder prediction 138 245 - -
Sto10g0124 332 MobiDBLite consensus disorder prediction 296 332 - -
Sto10g0124 332 CDD ZnF_GATA 248 305 IPR000679 GO:0006355|GO:0043565
Sto10g0124 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 306 - -
Sto10g0124 332 PANTHER GATA TRANSCRIPTION FACTOR 1 332 - -
Sto10g0124 332 SMART GATA_3 243 297 IPR000679 GO:0006355|GO:0043565
Sto10g0124 332 MobiDBLite consensus disorder prediction 66 95 - -
Sto10g0124 332 PANTHER GATA TRANSCRIPTION FACTOR 1 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0124 Sto-Chr10 952148 953227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0124 8 331 C2C2-Gata Transcription Factor Family AT5G66320 45.294 2.78e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto10g0124 GATA 7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0124 - - adu:107476627 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0124 10 952148 953227 Sto10g0124 10 952148 953227 ECH
Sto2g0798 2 6883106 6884231 Sto10g0124 10 952148 953227 ECH