Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0117 ATGGACGAGTCTACGTCGAAGACCGCTCAAGCTGTGTCCGACTCTAATGGATTGACATTGACTAAGCAAACGCCGGAGCAACTCGTGGCTAGAGCCATAGCTCCTGTGAAGGGCGAGTTCCTTCGTCCTCCACCTGTTCGGGCTTCCTCTGCAACTCAGAACGACGACGTTTCCGAACAAACGGATGATAAGGCCACTGTTCAGTCTGGCGGATtggtgaaggagaagaagtcgAAGCGCCAACTCAAGCGTGAGCGTCGTCAGGAACAAAAGTCTGCAAAAAACCTCTGTCCAGAGGTTGCAAAGACAGGAGATATTAGTTCATGTCCTTACAATGATAAATGCCGCTTCAGCCATGACTTTGAAGCCTTCAAGGCTCAGAAACCAGCTGATCTAGAGGGAGAATGTCCTTTCTTTAAAGGCGGAGGATCTTGCCCCTATGGGTTAGCATGTAGATTTTCAGGTACGCATACAGATGATATGCCTCCTAGTGATCTCAAAGGTCGGAGAAAAAGCTCTGAAATAAATGGACTGAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGCACTTCCCTAAGGCAGATGCCAAACTCACAGCTCTTGAGCTTTGGgAGAACAAAGACAAGGTTACTGAGAAGGCTACTGGAGGGTTGCTGTTTTATCGTTTTGATCTGCTATTTTTCTTGCTCTATTATGCTATTTTCTtattttcttttaatacaaGAGCACTATCGAAATCTAAGTTCGAAAGCTCTGCTGAGGTCACAAAAGATGATGGTGTCTGTGATACTGAccaagttgttgaaaaaagctGCATACAAGCTGAACCAGAAGCAGGAAATGAAGTCATACCTCCAGAAACTGATCAAAGCTTGAAGCTGCACCCACGTGAAAAGATGCTTATTGATTTTAGGGACAAGTTATATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCAGGAGGGTCTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACGAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGTGTTCAAATATGTGGGGCACATCCAGATACTGTGGCACGAACTGTAGAACTAATAGAGCAGGAATGTACCATTgattttattgatataaatatggGTTGCCCAATTGATATTGTCGTGAATAAGGGTGCTGGATCAGCTCTCCTTACAAAACCAATGCGGATGCAAAATATTGTGGAGGTAGCTTCAGGCACGGTAGATAAACCGATAACTGTCAAGGTACGAACAGCTtattttgaagggaaaaagCGCATTCATTCTATCATTGCTGACATGGGCTCTTGGGGAGCCAGTGCAGTAACAATACATGGTAGGTCACGTCAGCAACGCTATAGCAAGCTTGCTGACTGGGACTATGTCTACCAGTGTGCTAGGAAGGCCCCTAGTACTTTGCAAGTAGCAGGAAATGGAGATATTTTTTCATTTGTTGACTGGAACAACCACAAGGCTGAATGCTCTGAACTTGCTACATGCATGATTGCTCGTGGTGCGCTGATTAAGCCTTGGATATTTACGGAGATCAAGGAACAAAGGCACTGGGATATTAGTTCTGGCGAGCGgttaaatattttgaaagatTTTGTACATTTTGGCCTAGAACACTGGGGTTCTGACACTAAAGGAGTGGAGACAACCAGACGGTTTTTGTTGGAATGGCTTAGCTACACATGTAGATATATACCTGTTGGACTTTTAGAAGTTATTCCACAACGGCTAAACTGGCGTCCGCCATCTTACTATGGACGCGATGACCTTGAGACCCTAATGGCCTCAGACTCTGCAGCTGACTGGGTACGGATATCAGAGATGTTACTGGGAAAGGTTCCTGATGGCTTTAGATTTGCGCCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTGA 1986 0.4255 MDESTSKTAQAVSDSNGLTLTKQTPEQLVARAIAPVKGEFLRPPPVRASSATQNDDVSEQTDDKATVQSGGLVKEKKSKRQLKRERRQEQKSAKNLCPEVAKTGDISSCPYNDKCRFSHDFEAFKAQKPADLEGECPFFKGGGSCPYGLACRFSGTHTDDMPPSDLKGRRKSSEINGLSKDVQKLLWKNKMHFPKADAKLTALELWENKDKVTEKATGGLLFYRFDLLFFLLYYAIFLFSFNTRALSKSKFESSAEVTKDDGVCDTDQVVEKSCIQAEPEAGNEVIPPETDQSLKLHPREKMLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAHPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMQNIVEVASGTVDKPITVKVRTAYFEGKKRIHSIIADMGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPSTLQVAGNGDIFSFVDWNNHKAECSELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLEVIPQRLNWRPPSYYGRDDLETLMASDSAADWVRISEMLLGKVPDGFRFAPKHKSNAYDRAENG 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0117 661 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 120 IPR000571 GO:0046872
Sto10g0117 661 Gene3D - 86 164 - -
Sto10g0117 661 Coils Coil 72 92 - -
Sto10g0117 661 SUPERFAMILY FMN-linked oxidoreductases 309 622 - -
Sto10g0117 661 CDD DUS_like_FMN 309 544 IPR035587 -
Sto10g0117 661 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 26 661 - -
Sto10g0117 661 ProSiteProfiles Zinc finger C3H1-type profile. 135 160 IPR000571 GO:0046872
Sto10g0117 661 MobiDBLite consensus disorder prediction 1 26 - -
Sto10g0117 661 ProSitePatterns Uncharacterized protein family UPF0034 signature. 393 411 IPR018517 GO:0008033|GO:0017150|GO:0050660
Sto10g0117 661 MobiDBLite consensus disorder prediction 1 96 - -
Sto10g0117 661 Gene3D Aldolase class I 305 547 IPR013785 -
Sto10g0117 661 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 26 661 - -
Sto10g0117 661 ProSiteProfiles Zinc finger C3H1-type profile. 91 122 IPR000571 GO:0046872
Sto10g0117 661 SMART c3hfinal6 92 121 IPR000571 GO:0046872
Sto10g0117 661 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Sto10g0117 661 Pfam Dihydrouridine synthase (Dus) 312 546 IPR035587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0117 Sto-Chr10 889635 894501 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto10g0117 Dus 2e-51 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0117 K05544 - gmx:100783494 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0117 10 889635 894501 Sto10g0117 10 889635 894501 ECH