Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0081 ATGAGTGGGAAGGTGAAGTGGTTCAATGATCAGAAGGGTTTTGGTTTCATAACCCCTGACGCTGGCGGTGAAGATCTCTTCGTCCATCAGTCTTCGATCCAATCCCAAGGGTTTCGGAGTCTCGGCGATGGGGAGTCTGTCGAATTTGCGATCGATTCTGATGCTGACGGCCGATCTAAGGCAGTTGATGTCACTGGACCTGAAGGACAGCCAGTTCAGGGAAGCCGACGCGGAGGCGCTGACAGCGGCGGCGGAGGTGCTGGAGGAAATAGGGGCTATGGCGAATGGATTCTTGATTCGGGATGTTCACATCACGTCACCGGGAATGAAACCTTGTTTTCAGAACTGCGTGAACACTGTGGAGACAGAGTAATTGTGACTGCTGATAATTCAACTCATCCTGTGGTCAAAGAAGGTGCAGTAACCATTGAAGTAAATGACCAAGCAAGCCTAAAATTGCACGACGTGTATCACGTCCCAGGTTTGACTAAGAACTTGATATCTGTTCCTCAGATTACTGAATCTGGAAAATACGTGCTTTTTGGACCAAGTGATGTAAAAATACTAGATAATGTGAATGAAATGTCTGCTGATGTTTTATTTTATGGCAAGAAAAAAGGTTCTCTGTTTGTAATGACCGCAGGGGAAGCATATGTTAAGAAAACCAGTCAAACTGATAATGCCGCGATATGGCATGCTCGGCTGGGACATGTAGGATATCAATTGCTGCAACAAATATCTTCAAAGGGATTGGTGGATGGAATACCAAGTCTGAAGAATGTTCGCGAGAATGCGGTTTGCCAAGGATGTCAGTTTGGTAAGTCACACCGACTTCGATACAAAAGTTCATCAAACCGACGTTCAGGATGGAGGTGCATGGATTCGCAAACAAAGAAGTTCACAACCTCTAGAGACGTCGTGTTCGATGAAGTATCAACAACCTTCCCAACTTCAAAGTCTGTGATTCTTAATGATAGTAGCACAGAAATTCTGTTTCCTGAGGTCAATGAGAAAATAAGCAGTGATGATGAAAAGGAGAAACAAACACCTCCCGAAGATGATGAATCGAACGAGCAAGCTACAAGGCGTTCGACGAGGGACAGGAGGCAACCTCAGTACTTGAATGACTATGAAGTGTCGGAGGCAGATTCGAGCTTGTTtgtaaaaacaaaatcaaatatgCAGCTGTTGGTTCTTCTATACGTAGACGATATGATTATGACCGGAAGTGATGAGGATGAAATTTCCAGCCTAAGGCACAATTTATCTCTTCGTTTTGACATGAAGAATTTGGGAGAAGTAGATTGCTTCCTTGGCTTAGAGACGGTGAAGCTAACGAGGAGAGATCCGACGGTGGAATTGATGGGACCAAAGAAAGGGAAGATGATGGCCAGGAACCATATGGGTATGACCACAGGCAATCTGGCGGCGGCGCGCTTGCACAGGCTCTTGCAGCCGTGCATTCCTATGGCTTTCTCCCACACAAGGTACAGCGGCGTGCACGCGAAGCCGAACGTTATGAACTGGTGGATCAGCATTAGTATCACCGCCGCGTCTCGGAACCCTGACTTTGGAAGCAGCGAGAAGGCGTTCGAGTGGTTCAGAAGCATGTCTCCGAACGCCCAGTACACCGCCGACGCCGACGGCAGCGTCAGCGTCACAACGTATACCGTTGCCACTAGTGTAAGTGGTCATGAGAAGACCCAAGAAAGACCAGATTCTGTAGTTATGAAACGAAGGAATAAACACAGTGGTAGCACAACATGCTCCGAAGATGTATGTCCATGTCCTTTTGTCCAGGATGCTTATCAGGTAAGCCGTCCAGCTTCCCAATATGCCGTAGAAGACTTGAAACACAATGCCAGATAG 1869 0.4671 MSGKVKWFNDQKGFGFITPDAGGEDLFVHQSSIQSQGFRSLGDGESVEFAIDSDADGRSKAVDVTGPEGQPVQGSRRGGADSGGGGAGGNRGYGEWILDSGCSHHVTGNETLFSELREHCGDRVIVTADNSTHPVVKEGAVTIEVNDQASLKLHDVYHVPGLTKNLISVPQITESGKYVLFGPSDVKILDNVNEMSADVLFYGKKKGSLFVMTAGEAYVKKTSQTDNAAIWHARLGHVGYQLLQQISSKGLVDGIPSLKNVRENAVCQGCQFGKSHRLRYKSSSNRRSGWRCMDSQTKKFTTSRDVVFDEVSTTFPTSKSVILNDSSTEILFPEVNEKISSDDEKEKQTPPEDDESNEQATRRSTRDRRQPQYLNDYEVSEADSSLFVKTKSNMQLLVLLYVDDMIMTGSDEDEISSLRHNLSLRFDMKNLGEVDCFLGLETVKLTRRDPTVELMGPKKGKMMARNHMGMTTGNLAAARLHRLLQPCIPMAFSHTRYSGVHAKPNVMNWWISISITAASRNPDFGSSEKAFEWFRSMSPNAQYTADADGSVSVTTYTVATSVSGHEKTQERPDSVVMKRRNKHSGSTTCSEDVCPCPFVQDAYQVSRPASQYAVEDLKHNAR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0081 622 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 377 444 IPR013103 -
Sto10g0081 622 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 94 - -
Sto10g0081 622 MobiDBLite consensus disorder prediction 334 373 - -
Sto10g0081 622 MobiDBLite consensus disorder prediction 566 586 - -
Sto10g0081 622 SMART csp_8 2 67 IPR011129 GO:0003676
Sto10g0081 622 CDD CSP_CDS 1 66 IPR002059 GO:0003676
Sto10g0081 622 Gene3D - 1 78 IPR012340 -
Sto10g0081 622 PANTHER COLD SHOCK PROTEIN 2 1 94 - -
Sto10g0081 622 MobiDBLite consensus disorder prediction 336 373 - -
Sto10g0081 622 MobiDBLite consensus disorder prediction 562 589 - -
Sto10g0081 622 SUPERFAMILY Nucleic acid-binding proteins 2 66 IPR012340 -
Sto10g0081 622 PRINTS Cold shock protein signature 3 18 IPR002059 GO:0003676
Sto10g0081 622 PRINTS Cold shock protein signature 24 33 IPR002059 GO:0003676
Sto10g0081 622 PRINTS Cold shock protein signature 39 57 IPR002059 GO:0003676
Sto10g0081 622 ProSiteProfiles Cold-shock (CSD) domain profile. 1 66 IPR002059 GO:0003676
Sto10g0081 622 ProSitePatterns Cold-shock (CSD) domain signature. 14 33 IPR019844 -
Sto10g0081 622 Pfam GAG-pre-integrase domain 223 275 IPR025724 -
Sto10g0081 622 MobiDBLite consensus disorder prediction 54 88 - -
Sto10g0081 622 Pfam 'Cold-shock' DNA-binding domain 1 66 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0081 Sto-Chr10 616368 629515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0081 380 444 Receptor kinase-like Gene Family AT4G23160 33.846 7.12e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Sto10g0081 RVT_2 8.4e-13 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0081 - - han:110924058 144.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0081 10 616368 629515 Sto10g0081 10 616368 629515 ECH