Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0078 ATGCGTAAGGAGATCTCGTTTCTCGCTCAACCTAGATGTCTCCTTTTCCTCCTCGTTCTCATAATTTTCCTCATTTGCGCTCTATCTGGCTCTAAACAGGTTGAGGACAAAGCAGAAGAAGAACCTGAAATTACACATAGAGTATTCTTGGAAGTTGACATTGATGGACAACGTTTTGGTAGGATCGTGATTGGATTATTTGGCGACGTTGTACCAAAAACTGTGGAAAACTTTAGAGCTTTGTGTACAGGGGAGACAGGCAAGAATTCCAGTGGCATACAACTTCGTTATAAAGGAACACCGTTTCATCGCATAATATCTGGTTTCATGATTCAGGGTGGAGACATTATTCATCGTGATGGCAGAGGATATGAATCTATTTATGGTGGCACCTTTCCTGATGAGAATTTCAAGAtaaaacattcacatgcagGAGTTGTATCTATGGTGAACTCAGGACCTGATTCCAATGGCTCGCAGTTCTTTATCACCACAGTGAAGGCTAGCTGGTTGGATGGAGACCATGTTGTGTTTGGGAAGGTAATTGAAGGCATGGATACCGTGTTTGCAGTAGAAGGTGGAGCAGGAACCTACAATGGGAAACCCAGAAAGAAGGTAGTAATTGCAGACTCTGGTGAGATACCTAAGACCCAATGGGATGAACAAAGATGA 672 0.4182 MRKEISFLAQPRCLLFLLVLIIFLICALSGSKQVEDKAEEEPEITHRVFLEVDIDGQRFGRIVIGLFGDVVPKTVENFRALCTGETGKNSSGIQLRYKGTPFHRIISGFMIQGGDIIHRDGRGYESIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGDHVVFGKVIEGMDTVFAVEGGAGTYNGKPRKKVVIADSGEIPKTQWDEQR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0078 223 Gene3D - 33 220 IPR029000 -
Sto10g0078 223 SUPERFAMILY Cyclophilin-like 43 214 IPR029000 -
Sto10g0078 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
Sto10g0078 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 222 - -
Sto10g0078 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Sto10g0078 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Sto10g0078 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Sto10g0078 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Sto10g0078 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Sto10g0078 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 222 - -
Sto10g0078 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 54 211 IPR002130 GO:0000413|GO:0003755
Sto10g0078 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 97 114 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0078 Sto-Chr10 592860 595708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0078 60 211 U-box Gene Family AT5G67530 43.137 1.07e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0078 - - vra:106760817 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0078 10 592860 595708 Sto10g0078 10 592860 595708 ECH