Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0074 ATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACACCAACAAAGGTGCTTGGACCAAGGAAGAAGACGACCGTCTCATCGCCTATATTCGCGCCCACGGCGAGGGCTGTTGGCGTTCTCTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGTCTCCGCTGGATCAACTACCTCCGACCCGACCTCAAACGGGGCAATTTCACGGAGGAAGAAGACGAGCTCATCATCAAGCTCCATAGTCTTCTCGGCAACAAGTGGTCTCTAATCGCCGGGAGATTACCCGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCCATATCAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTTCCACTCACAGGCCTCTCAATGACACCAATTCTGCTCagattaataacaataataataatcaagaaGCCACCACAATCTCTTTCGCTTCCTCTGTGAAACAAGAATTGGACAGTAATAATCAGAAAGAAGGCAAGAGATCATCGGGTTCAGGTGTAGTAGTGGAAGTAACGGAAGAACGATGCCCTGACTTGAATCTTGAGCTGACCATTAGTCCTCCGCATCAAGAGGCAGAGGATAATCAAGCATTGTTGATGAAGCATAATGGAGAGAGAAGAAGCCTCTGTTTCGCTTGCAGTTTGGGATTGCAGAATAGTAAGGATTGCAGCTGTGGGATTGTTGGTAGCGTCATCAATGGCGGCACAAGTAGTAGCAGTGGTAGTGGGTATGATTTCTTGGGGTTGAAAAGTGCTGTTTTGGATTACAGAAGCTTGGAGATGAAATGA 813 0.4797 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPSTHRPLNDTNSAQINNNNNNQEATTISFASSVKQELDSNNQKEGKRSSGSGVVVEVTEERCPDLNLELTISPPHQEAEDNQALLMKHNGERRSLCFACSLGLQNSKDCSCGIVGSVINGGTSSSSGSGYDFLGLKSAVLDYRSLEMK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0074 270 Gene3D - 69 170 - -
Sto10g0074 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto10g0074 270 SMART sant 13 63 IPR001005 -
Sto10g0074 270 SMART sant 66 114 IPR001005 -
Sto10g0074 270 CDD SANT 69 112 IPR001005 -
Sto10g0074 270 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sto10g0074 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto10g0074 270 CDD SANT 16 61 IPR001005 -
Sto10g0074 270 MobiDBLite consensus disorder prediction 120 141 - -
Sto10g0074 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto10g0074 270 Gene3D - 14 66 - -
Sto10g0074 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto10g0074 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto10g0074 270 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Sto10g0074 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 238 - -
Sto10g0074 270 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 238 - -
Sto10g0074 270 MobiDBLite consensus disorder prediction 155 177 - -
Sto10g0074 270 MobiDBLite consensus disorder prediction 125 141 - -
Sto10g0074 270 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0074 Sto-Chr10 557803 558719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0074 1 270 MYB Transcription Factor Family AT4G38620 60.279 1.96e-115 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto10g0074 Myb_DNA-binding 3.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0074 K09422 - jre:109006592 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0074 10 557803 558719 Sto10g0074 10 557803 558719 ECH
Sto2g0960 2 8320217 8322302 Sto10g0074 10 557803 558719 ECH