Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0056 ATGAACATCATCACCCAAAACTTGTCTGAGAGACTAAGGCCCCTTGTGGGTTTGAATGGGTGGGACTACTGTGTTCATTGGAAATTAAGTGAAGACCAAAGGTTTCTTGAATGGATGGGATGCTGTTGTGGTGGGACTGAAGGTAGCCAAAATGGTGGGGAAGAACTTCTTTTCCCTGTTTCTTCAGCTGCTTCATGCAGAGATACCATGTATCCTCATCCCACAACAAAATGCTGTGCTCTACTTTCCCAACTTCTCACTTCCATCCCCTTAGATTCTggGATTCATGCAGAAACACTATTATCAAACCAACCCAATTGGGTGAACTATTCCAATAGCTTAGATTCAAACACTTTGGAAGAAACACTTGGGACCCAAGTTTTGATTCCGGTGCCAGGTGGACTAGTGGAACTGTTTGTAACAAAACAAGTACCAGAAGATCATCAGGTGATTGATTTTATCACAGCGCAGTGCAATATGGATATGAGCTTCGGTATTGACGTGAATTCAAACAGTCATATGCTATCAAATATGAATCCACTTTTAGGTGATGAGAATGATGGGAATACTATAGCATCAGAGACTTCAAGTCTTCCCCCACATGAATGCAATTCTCCATTGAACTTGATGCAGCAATTCAATTACAACCCACCACAGAAGAGGAGGAAAAGTGACGCCTTTTTCGAAGATTCCCACGGTTCCTTCCTTCTGGACAAAACCCAACAATTTGGAGAGGCATTGGAGAAGAAAGAGCAGCAAGGGGACGAAAAGGATTTAATCAAACACGTGGTGGGCAGGTCAGATTCGATGTCAGATTGCAGCGATCAGAACGAAGAAGAGGATGATGGGAAGTATAGGCGTAGGAATGGGAAAGGGAATCAATCGAAGAATCTTCTAGcagagaggaggaggaggaagaagctgAATGACAGCTTGTACAACCTTCGATCTTTGGTTCCCATAATTTCAAAGCTAGACAGAGCGTCGATTCTTGGGGATGCAATAGAATTCGTGAAGGATTTACAGAAGCAAGTGAAAGAACTGCAAGATGAGCTAGAAGAACATTCAGATATGGGTGTACAAGTACAACAACAGCAAGATGATGTTGTGGGGGTTGAAGTTGGACCAAAAGCTGAATCAATTAACATGACCCAAAATGGGTTTCATGTGGGGACATCAGGAAATGGCTATATCTTGAAGCAAAAACAGGAATTGGATACGCCCAATGAGAAGCAGACACAACAAATGGAgCCGCAAGTGGAAGTGGCAGTGATAGATGGGAATGAGTTATTTGTGAAGGTGTTCAGTGAGCATCGGCCAGGTGGGTTTGTCAAACTGATGGAAGCATTCAATACTCTGCGTATGGAAGTCATACATGCCACCGTCACCAGCCACAAAGGCCTTGTCTCTAATGTTTTCAAAGTAGAGAAGAGGGAGAATGAAATGGTTGAAGCTGAAGATGTAAGAGAGTCATTGCTGGAGCTTATGAGGAACCCATGTAGAGGGTGGAATCATGAGATGAATACGGCTAGTACAGCCATAGCATCAGAGAATGGAGTTGCAAGATCAGAGTATCATCAACAACACCATCTTCACAACCATCACAATATGGGTGCCTATCATCATCCCCACCATTTACACCATATTCATACTTAA 1656 0.4215 MNIITQNLSERLRPLVGLNGWDYCVHWKLSEDQRFLEWMGCCCGGTEGSQNGGEELLFPVSSAASCRDTMYPHPTTKCCALLSQLLTSIPLDSGIHAETLLSNQPNWVNYSNSLDSNTLEETLGTQVLIPVPGGLVELFVTKQVPEDHQVIDFITAQCNMDMSFGIDVNSNSHMLSNMNPLLGDENDGNTIASETSSLPPHECNSPLNLMQQFNYNPPQKRRKSDAFFEDSHGSFLLDKTQQFGEALEKKEQQGDEKDLIKHVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPIISKLDRASILGDAIEFVKDLQKQVKELQDELEEHSDMGVQVQQQQDDVVGVEVGPKAESINMTQNGFHVGTSGNGYILKQKQELDTPNEKQTQQMEPQVEVAVIDGNELFVKVFSEHRPGGFVKLMEAFNTLRMEVIHATVTSHKGLVSNVFKVEKRENEMVEAEDVRESLLELMRNPCRGWNHEMNTASTAIASENGVARSEYHQQHHLHNHHNMGAYHHPHHLHHIHT 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0056 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Sto10g0056 551 MobiDBLite consensus disorder prediction 265 296 - -
Sto10g0056 551 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 155 IPR025610 -
Sto10g0056 551 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 90 505 - -
Sto10g0056 551 Pfam Helix-loop-helix DNA-binding domain 299 342 IPR011598 GO:0046983
Sto10g0056 551 CDD bHLH_AtAMS_like 295 358 - -
Sto10g0056 551 SMART finulus 298 347 IPR011598 GO:0046983
Sto10g0056 551 CDD ACT_UUR-ACR-like 432 496 - -
Sto10g0056 551 Coils Coil 331 365 - -
Sto10g0056 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 356 IPR036638 GO:0046983
Sto10g0056 551 Gene3D - 281 357 IPR036638 GO:0046983
Sto10g0056 551 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 90 505 - -
Sto10g0056 551 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0056 Sto-Chr10 443939 446153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0056 6 511 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.761 3.04e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g0056 bHLH-MYC_N 2.2e-21 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0056 - - aprc:113871920 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0056 10 443939 446153 Sto10g0056 10 443939 446153 ECH