Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0048 ATGGGTGTGGCTCAAAACAATATCGATTTGGAGGAGGGAACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGGGTGGCTGGACCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAATATCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTAGACGTGGCCAGGTTCTAGAAGTTGATGGAGAAAAGGCTGTTGTTCAGGTCTTTGAAGGTACATCCGGGATTGACAATAAATTTACAACCGTGCAATTTACTGGAGAGGTGTTGAAAACTCCTGTCTCACTGGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCTATTGATAATGGTCCACCCATATTGCCTGAGGCTTACTTGGATATATCAGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATTCAGACAGGAATATCTACAATTGATGTCATGAACTCCATTGCTAGAGGTCAGAAGATCCCCCTTTTTTCAGCTGCTGGTCTTCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAGGCTGGCTTAGTCAAGCGATTGGAGAAATCCGATAATCTTCTTGAGGCCTTCCAGGCTTACTGTTTTAACACTTTCCTGGCTATGGAACTTATGgATGGGGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTCAACATGGAGACTGCACAATTTTTTAAACGTGACTTTGAGGAGAATGGTTCGATGGAAAGAGTGactctttttcttaatctgGCAAATGATCCCACAATTGAGCGTATCATCACGCCTCGTATTGCGCTTACTACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGAGAAGAAGTGCCTGGAAGGCGTGGGTATCCTGGTTACATGTATACGGATCTTGCAACAATCTATGAACGTGCTGGAAGAATTGAGGGGCGAAAGGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCCGATCTTACAGGATATATTACCGAGGGGCAGATATACATTGATAGGCAGCTGCAGAACAGACAGATATACCCACCTATCAATGTCCTTCCATCGCTTTCTCGGTTGATGAAGAGTGCCATTGGTGAAGGAATGACTCGGAAGGATCATTCTGATGTTTCTAACCAGCTGTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACTTGCTGTATCTTGAATTTTTGGACAAGTTCGAGAGGAAGTTTGTTACCCAAGGAGCTTACGACACCCGCAATGTGTTCCAGTCACTTGATCTTGCATGGACTTTGCTTCGGATTTTCCCCCGTGAACTTCTTCATCGTATACCAGCAAAGACTCTTGATCAGTATTATAGCCGAGATGCCAACAATTGA 1515 0.4297 MGVAQNNIDLEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEAFQAYCFNTFLAMELMDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNVFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDANN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0048 504 Hamap V-type ATP synthase beta chain [atpB]. 18 502 IPR022879 -
Sto10g0048 504 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Sto10g0048 504 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Sto10g0048 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 399 IPR027417 -
Sto10g0048 504 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 503 - -
Sto10g0048 504 ProSitePatterns ATP synthase alpha and beta subunits signature. 384 393 IPR020003 GO:0005524
Sto10g0048 504 Gene3D - 29 504 - -
Sto10g0048 504 CDD ATP-synt_V_A-type_beta_C 403 497 - -
Sto10g0048 504 CDD V_A-ATPase_B 92 395 - -
Sto10g0048 504 PIRSF V-ATPsynth_beta/V-ATPase_B 12 504 IPR022879 -
Sto10g0048 504 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 503 IPR005723 GO:0033180|GO:0046961|GO:1902600
Sto10g0048 504 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 393 IPR000194 GO:0005524
Sto10g0048 504 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 503 IPR022879 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0048 Sto-Chr10 399746 405641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0048 1 504 Primary Pumps ATPases(2) AT4G38510 93.254 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0048 K02147 - twl:119990660 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0048 10 399746 405641 Sto10g0048 10 399746 405641 ECH