Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0039 ATGACCTCCGCCTCTTGCCCCTCCCCTCGCGGCGAGGTCATCGTCAAGATCGACGACGCCGATTCCAAGTCCACTTTGCCATTGCCATCCACGCAGAGCAGCAGCAAGATTTGGCGGGAATCCAGTTATGACTTCTGGGAAGACGACGATGTCATGAATTTGAAAAGGCGCGACAAGAGTTTCGATTTCAAGCACTCTTCTTCCGTTTCACAGAGTAATGTAATTCCTGAGGATCCTCCCTCTAAGCTCATTGGCAATTTCTTAAAGAACCAGAAACTCTCGGGTGATATGTCGCTCGATATGGATTTGGAAATGGACGAGCTCCAACATGATCAACATCACCGCAATTTCCCTCCCGTTGACGAGTCCACCTCCGTTAACCAATTCTCCAGGGAGCTCAAGGTCTCCTTCGAGGAACCACCTTCCACTTCCGCCGATCATGAACTCAACGATTTCATTAGGAGAAGGTTCAAGGAATCAGCCACCGCCGATGAATTTCCAAAACCGCCTCAACCGCCGCATCACGATCATCGCGCCTCCACTCAAATCAATTCCTCGCTACCCGGAGACGCCGAGGTTGTCAGGTGTACCTCCAATGCGTCCTTCGAGAGAAACCTTTCGTTGCAGAGGAAGTCCGGTTTGCTCCTCAGGGCCAAAACAAAATCCAGATTGATTGACCCGCCCGAAGAGCCCGATCACCGGAAATCGGAGCGGCTAGTGAAATCGGGTCAAGTATTTTCGGGCATGCAGGGTGGGGGGAAGAGAGGGGATGATGAAGAGGAAGATCCGTTTTTGGAAGAGGATCTTCCGGATGAATTCAAACAAACCCACTTCAGTATATGGATTCTGTTAGAGTGGTTGAGTTTGATTTCCATCGTTGCTGCTTTGATCACAACCCTGTGTATCCCTTTCTTGAGGGAAAGAAATCTATGGAAGCTCAAGTTGTGGAAATGGGAGGTCATGATTTTGGTTCTCATTTGTGGTCGCTTAGTCTCAGATTGGGTGATCCGAATAGCAGTCTTCTGCATTGAAAGGAATTTCCTTCTACGTAAGAGGGTCCTTTATTTTGTCTATGGTGTGAAGAAGGCTGTTCAGAATTGCCTATGGTTAGCTCTGGTTCTAATCGCTTGGCATTTTCTGTTTGACCAAAGAGTTCAAACTGAGACAAGAAACGTGGACTTTCTAGAGTACGTCACCAAGATCTTGATCTGCTTCTTGGTGGGTACTCTGGAATCACTGTTTAATCAATTTGTGATTGAAACACTGTCTGGGCCACCATTGGTGGAACTTCAGAGgcaagaggaagaagaggagagGCTTGCTGATGAGGTTCAGAAACTTCAGAATGCAGGGGTTACCATACCCCCTGATCTTAGGGCATCTGCCTTTGCTTCTATTGCTACAAGGGCGAACAAGAGCGGAATGCTGCAGAAAAGCCCTCACTTGAAAAGTGGCAAGTTTTCACGACCACTCTCGAAGAAATCAGATGATGGGATAAGTATTGATCACTTGCATAAGTTGAATCACAAGAATGTGTCTGCATGGAATATGAAAAGGTTAATGAATATGGTTCGACATGGGGCTCTTTCCACATTGGATGAGCAGATACTTGGTGGTTCAACTAATGAAGATGAAAAAGCCACGCAAATAAGAAGTGAAAATGAAGCAAAAGCTGCAGCAAAGAAAATATTTCTAAACGTCACTAGGAGGGGATCCAGGTTCATATACCTAGAGGACGTGTTGCGCTTTATGAGAGAGGATGAAGCTATCAAAACCATAACTCTGTTCGAAGGAGCGACGGAGACTGGGAAAATCAGCAAATCAGCCTTGAAGAACTGGGTGGTGAACGCGTTCCGAGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACGGCAGTGAACAAACTTCATCGAATGCTCAACTTTGTTGTGGCCATTATAATACTTGTTATTTGGCTTTTAATATTGGAAATTGCCACCAGCAAATTTCTACTCTTCGTCAGCTCCCAGCTTGTGTTGGTCGCTTTTATATTTGGAAATACCTGCAAGACCATTTTTGAAGCAATCATTTTCTTATTTGTCATGCACCCTTTTGACGTCGGAGATAGATGTGAAATTGATGGGGTCcagATGGTAGTGGAAGAAATGAACATATTGACAACCGTATTTCTTAGATATGACAATCTCAGGATTATATTCCCTAACAGTGTTCTTGCTACCAAGGCTATTAATAATTTCTACCGGAGTCCTGACATGGGAGATGCTGTTGAGTTCTCTGTACATGTATCTACGCCGTTTGAAAAGATATCACTAATCAAACACAAATTAGAGAGTTACGTGGAAAACAAGAAGGAGCATTGGTTTCCTGCACCTATGATAGTGTTCAAGGATAATGACCAATTGAACATGATAAGAATGGCAATTTGGCCAACTCACAGAATGAACCACCAAGACATGGGAGAAAGATTTATCAGAAGATCCCAATTGATTGAAGAGATGATCAAGATTTTTCGGGAGACCGACATCCATTTCCGCCTTCTTCCTCTTGATATTAGTGTTAGAAACATGCCCTCCACTTCTGAACGCCTTCCTCCTAGTTGGATGCTCACTTCCACAAGTAACAATTAG 2634 0.4423 MTSASCPSPRGEVIVKIDDADSKSTLPLPSTQSSSKIWRESSYDFWEDDDVMNLKRRDKSFDFKHSSSVSQSNVIPEDPPSKLIGNFLKNQKLSGDMSLDMDLEMDELQHDQHHRNFPPVDESTSVNQFSRELKVSFEEPPSTSADHELNDFIRRRFKESATADEFPKPPQPPHHDHRASTQINSSLPGDAEVVRCTSNASFERNLSLQRKSGLLLRAKTKSRLIDPPEEPDHRKSERLVKSGQVFSGMQGGGKRGDDEEEDPFLEEDLPDEFKQTHFSIWILLEWLSLISIVAALITTLCIPFLRERNLWKLKLWKWEVMILVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCLWLALVLIAWHFLFDQRVQTETRNVDFLEYVTKILICFLVGTLESLFNQFVIETLSGPPLVELQRQEEEEERLADEVQKLQNAGVTIPPDLRASAFASIATRANKSGMLQKSPHLKSGKFSRPLSKKSDDGISIDHLHKLNHKNVSAWNMKRLMNMVRHGALSTLDEQILGGSTNEDEKATQIRSENEAKAAAKKIFLNVTRRGSRFIYLEDVLRFMREDEAIKTITLFEGATETGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFVVAIIILVIWLLILEIATSKFLLFVSSQLVLVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTVFLRYDNLRIIFPNSVLATKAINNFYRSPDMGDAVEFSVHVSTPFEKISLIKHKLESYVENKKEHWFPAPMIVFKDNDQLNMIRMAIWPTHRMNHQDMGERFIRRSQLIEEMIKIFRETDIHFRLLPLDISVRNMPSTSERLPPSWMLTSTSNN 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0039 877 PIRSF Memb_At2g17000 3 410 IPR016688 -
Sto10g0039 877 PIRSF Memb_At2g17000 409 877 IPR016688 -
Sto10g0039 877 MobiDBLite consensus disorder prediction 161 186 - -
Sto10g0039 877 MobiDBLite consensus disorder prediction 1 35 - -
Sto10g0039 877 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 10 115 - -
Sto10g0039 877 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 411 870 - -
Sto10g0039 877 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 126 410 - -
Sto10g0039 877 SUPERFAMILY Sm-like ribonucleoproteins 689 748 IPR010920 -
Sto10g0039 877 MobiDBLite consensus disorder prediction 161 175 - -
Sto10g0039 877 Gene3D - 699 748 IPR023408 -
Sto10g0039 877 Coils Coil 427 450 - -
Sto10g0039 877 MobiDBLite consensus disorder prediction 474 494 - -
Sto10g0039 877 MobiDBLite consensus disorder prediction 62 81 - -
Sto10g0039 877 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 10 115 IPR016688 -
Sto10g0039 877 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 411 870 IPR016688 -
Sto10g0039 877 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 126 410 IPR016688 -
Sto10g0039 877 Pfam Mechanosensitive ion channel 641 846 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0039 Sto-Chr10 348167 351399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0039 10 877 Mechanosensitive Ion Channel Family AT1G78610 52.700 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0039 K22048 - gmx:102665658 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0039 10 348167 351399 Sto10g0039 10 348167 351399 ECH