Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0030 atgggaGGAAGAGATGAGGAAATGGAACTTCCAGGATTCCGATTTCACCCAACGGAAGAAGAACTGATTGATTTCTATCTCAAAAATATGATCACCGGCAAGAAACAACGCTTCCACATCATCGATTTCCTCAACATCTATCACTATGATCCATGGGATTTACCTGGGATGGCGAAGGTTGGGGAAAGAGAATGGTACTTCTTGGTGCCAAGAGACAAAAAGCAGGGCAGCGGGGGAAGGCCGAACCGGACGACGCAGAAAGGGTTCTGGAAAGCCACCGGTTCAGACCGGAAGATCCTGAGCTTGTCGGATCCAAAACGCCTCATTGGGCTCCGAAAGACGCTGGTTTTCTACGAGGGAAGGGCTCCTCGTGGATCCAAGACGGATTGGGTTATGAATGAGTATCGCCTCCCGGACACTTATCACTTCCCTAATAAGGACAACATAGTGTTGTGCAAGATATATAGAAAGGCAACTTCATTGAAAGTGCTGGAGCAGAGAGCAGCTATGGAGGAAGATCAGATGAAGCAAATAATAatggcttcttcttctccatccccAGCTTCATCCTCAAACGACGTCGTCAAGACAGAAGTTGAAGTTGAACAAAACcaaatcattattatttgtgataataataataatgttcaAGTTGAACACAAACCTAAATATAATTGTATTAGTATTAGTAAATCCTTATTCCCCACATCCACATCCACATCCAAGAATTGGAAGGAACAGAAGCTGCTTCCGGAGCTCCAACTACCCATCAACATCATGGACTGCTCCCAAGATCCTTTCTGGACTCAGCTTAACAGTCCACCTTGGTTCCAATGTTTGACTCCTTATTCCAACATCATCAATTTCTAA 870 0.4184 MGGRDEEMELPGFRFHPTEEELIDFYLKNMITGKKQRFHIIDFLNIYHYDPWDLPGMAKVGEREWYFLVPRDKKQGSGGRPNRTTQKGFWKATGSDRKILSLSDPKRLIGLRKTLVFYEGRAPRGSKTDWVMNEYRLPDTYHFPNKDNIVLCKIYRKATSLKVLEQRAAMEEDQMKQIIMASSSPSPASSSNDVVKTEVEVEQNQIIIICDNNNNVQVEHKPKYNCISISKSLFPTSTSTSKNWKEQKLLPELQLPINIMDCSQDPFWTQLNSPPWFQCLTPYSNIINF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0030 289 SUPERFAMILY NAC domain 10 157 IPR036093 GO:0003677|GO:0006355
Sto10g0030 289 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Sto10g0030 289 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 289 - -
Sto10g0030 289 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 7 289 - -
Sto10g0030 289 Coils Coil 161 181 - -
Sto10g0030 289 Gene3D NAC domain 18 161 IPR036093 GO:0003677|GO:0006355
Sto10g0030 289 ProSiteProfiles NAC domain profile. 9 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0030 Sto-Chr10 283943 284962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0030 3 286 NAC Transcription Factor Family AT2G17040 54.082 7.75e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto10g0030 NAM 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0030 - - qsu:112004646 344.739