Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g2000 ATGAAAGGGCGGAGCAGAGAATTTATTGATTCCGCTTCCTCATCGCTGGTGTCAAACGCGCTTCAGCAGCGCCTCCAATTCCTTGTGCAGAGCCGTCCCGAGTGGTGGGTCTACGCCATCTTCTGGCATGCCACCAAAGACGGTGATTCCCCTCTCACATTAGAATATGGCGATGGCTACTTTCGCGGCACGAAGGGcaaagaggaaaaggaaattaGCATGTCGGGGGAACAAACGAGGAACTTGACCGACATCGAATGGTTTTACAGGGTTTCGCAAACTCGGTCGTATGTTGCCGGGGACGGTGTCGTTGGGTGTGCCTTCAGCTCAGGGGTAGATGTTTGGTTGAGCGGAGTGAACGAGTTTGAACTGAACGAGTGTGACGAGAGAGTACGGGAAGCTCGCAGTCACGGGATCCACACTTTAGTCTGCGTTTGTACGCCACGTGGCATTCTGGAGCTCGGTTCCTGTCACGTGTTCACCCTGGATTACGGCCTGCTCCAAATGGCCAAATCAGTGTTTGAAGTGAACAACATTGACGAACGTCAGAATCAGAATCCACTTTACAACCCCTGGGTGGTTCCAAACACAGAGAAAGAGAAACAGAGAAGAAGAGAGTGTGATGATGCAACGAAGGCGCCAGGGCCAGGGGTAGATGGATCGTCCACTGACTCGTCAGGACCTTCTGATGCAGACGCTCCTTTCGGCAGCAATAATAATGTTGTTCTGATGATGACGAGAACTAGGGCAGGGAGGGCACGTGACCCGCTGCCTATAAATCATGTGGAGGCTGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCTGCAGTCCCCAACGTGTCCAAGATGGACAAAGCGTCCTTGCTTTCGGACGCGGTTGCCTACATCAATGAACTCAAGGCCAAAATCAACCACCTGGAGACTGCATTAGAGAGCAATGCCAACAGACCCAAAGAGGAAGCTGCAGAGCATGTCCAAACCCAGACCATTCATTCCTCCACCTCAGCAATTGCAAGTACTTATATGAGAGTTGAAGTAAAGATCTTGGGATCCGAGGCCATGATAAGGGTCCAGAGCCTAAACGTGAACCACCCATCGGCAAGGTTAATGGATGCTCTCAGGGACGTCAATTTGCAAATTCTCCATGCCACAATGTCCAACATCAAAGAGATGATGCTGCAAGACGTCGTCGTCAGGGTTCCGCATGACCTCATGACCGAAGACGCGCTCAAAAATGCCATTCTTCACAGACTCTAG 1275 0.509 MKGRSREFIDSASSSLVSNALQQRLQFLVQSRPEWWVYAIFWHATKDGDSPLTLEYGDGYFRGTKGKEEKEISMSGEQTRNLTDIEWFYRVSQTRSYVAGDGVVGCAFSSGVDVWLSGVNEFELNECDERVREARSHGIHTLVCVCTPRGILELGSCHVFTLDYGLLQMAKSVFEVNNIDERQNQNPLYNPWVVPNTEKEKQRRRECDDATKAPGPGVDGSSTDSSGPSDADAPFGSNNNVVLMMTRTRAGRARDPLPINHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVAYINELKAKINHLETALESNANRPKEEAAEHVQTQTIHSSTSAIASTYMRVEVKILGSEAMIRVQSLNVNHPSARLMDALRDVNLQILHATMSNIKEMMLQDVVVRVPHDLMTEDALKNAILHRL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g2000 424 MobiDBLite consensus disorder prediction 197 212 - -
Ssu9g2000 424 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 21 174 IPR025610 -
Ssu9g2000 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 305 IPR011598 GO:0046983
Ssu9g2000 424 Pfam Helix-loop-helix DNA-binding domain 260 305 IPR011598 GO:0046983
Ssu9g2000 424 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 16 424 - -
Ssu9g2000 424 SMART finulus 262 311 IPR011598 GO:0046983
Ssu9g2000 424 MobiDBLite consensus disorder prediction 185 240 - -
Ssu9g2000 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 322 IPR036638 GO:0046983
Ssu9g2000 424 MobiDBLite consensus disorder prediction 218 240 - -
Ssu9g2000 424 PANTHER MYC 16 424 IPR045084 GO:0003700|GO:0006355
Ssu9g2000 424 Coils Coil 302 322 - -
Ssu9g2000 424 Gene3D - 252 321 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g2000 Ssu-Chr9 58164760 58166034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g2000 13 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.943 1.03e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu9g2000 bHLH-MYC_N 1.2e-33 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g2000 - K13422 gmx:100777730 565.459