Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1994 ATGGGAGGGACTCATCAGCAAAGCCAAAGCTACTCTGCCAACCCCGCCGACTACAAGCTTCTAGAAGAAGTTGGCTGTGGCGCCAGCGCCACCGTCTACAGAGCGATCTATCTCCCCTTCAACCAACTCGTCGCTATTAAGTGCTTGGATCTGGATCGCTGCAATATCAATCTCGATGACTTGCGTAGGGAGGCCCAAACGATGAGTCTGATTGACCACCCGAACGTGATGAGGGCCTACTGCTCCTTCGCGGTGGAACGGAGCCTCTGGGTGGTGATGCCGTTCATGGACGAGGGCTCCTGTTTGCACCTCATGAAGATAGCTTACACCGACGGCTTCGAAGAGGACGCAATCGGATCCACCCTCAAGGAAACTCTCAAGGCCTTGCACTACCTCCACCAACACGGCCACATTCATCGGGACGTCAAGGCCGGCAACATTTTACTCGACAGCAACGGCGCCGTCAAGCTCGCCGACTTCGGCGTCGCCGCCTGCTTGTTTGACGCCGGCGATAGACACCGTTCCAGAAATACTTTCGTGGGGACCCCTTGCTGGATGGCTCCTGAGGTGCTGCAACCTGAAGGTGGCTATAATTCCAAGGCCGATATTTGGTCTTTTGGGATTACGGCACTTGAGTTGGCTCATGGTCATgcaccattttcaaaatatcCTCCAATGAAGGTTCTTCTAATGACCATACAGAATGCCCCTCCTGGTCTTGATTATGATCGTGATAAAAAGTTCTCTAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTGAAAGATCAAACAAAAAGGCCATCAGCAGAGAAGTTACTGAAACATTCCTTCTTCAAACATGCTAAGCCTCCCGAGCTCTCTGTAAAGAAATTGTTTGCTGACTTGCCACCTCTTTGGAATCGTGTAAAAGCCCTCCAGCTCAAAGATGCAGCACAGCTAGCAGTGAAGAAAATGCCTTCTGCAGAAGAAGAGGCGATATCTCAGAGTCAATACCAACGAGGAGTTAGCACGTGGAACTTTGATATTGATGATTTGAAAGCTCAAGCTTCATTGGTGAgggatgatgatgataatgcaGAGATGAGGGAAGaagatgaaaacaaattttttactaattacaAGGCTGGTGCAATTGATTCCCAGTCTAGTACTGGCAAAATGAATTCAGAGAAATCACCACAGAATAAAATCACATCACAAGTAGGTGCTATTGACATAAAACAGACTGAGCAGAGTGAATACTTGAACAAAAAGGAGAAGATTCTTGAAAGTGATCTCCAGGAACCTGGATTgcccaaaaatattatttggaaGAGAAATGGGTCAATTATGGAGGCAACAACATCTACTGTAGAGAAAGATATAGTTATTAGCAAAATTAAAGGTCAATCTGTGAAAAGCCATCAAACCCAAAGTGGACCACTGTTGCCAGGCACAGTTCTCAGTCATTCTTCATCAGAAAGGGGACGAACATTAGAAAGgtttgaGAACGGAAATCAGTTGTTGGGCGAGAAAAATATTCGTGAAGTGCGACGAGCTCCAAGTTTTAGTGGTCCATTGATGCTTCCAACGCGAGCTTCAGCAAATAGTTTATCGGCTCCAATAAAGTCTTCTGGAGGATTTAGTGATTCCTTGGATGACAAGTCTAAGGCTAATTTAGTGCAAATTAAAGGGCGATTCTCTGTGACGTCAGAAAATTTAGATCTTGTGAAGGATATTCCTGCAAGTTCAGTTTCACGCCAATCTTCACAGgGATCATTGCAGAAATCTACCAGTGTTGGTGATTGGATGTTGGAATCCAAACAAATGCCAATTGGTCAGGCCACCAAAGATTCTGCCACCAACAATATCTCTGCATCACTTCTTACGACTCGCCTACAAAATCTTTTCCAGCAAACATCTATTCAACAGGAACTTATAGTGAATCTGTTAAATAGCTTGCAATCTGCTGAAGCAACTGAAGTTTCACAGAATGGAAAATTGCCACCATTACCTCGCGGTTCAGAAATAAATGGAAGTGTTGATACAGCAGCTTCAGAGAGGGAACGTCTTCTGCTGCTCAAAATTTTAGGGCTTCAGACTCGGCCTGCATCAACTTCAAAAGGGCTTAAGTACTTCTCAGCTTTATTTTCCCCTCAGTTACACACAAATAACCTCACAAGAATACAAAATCCCAAATCTTCTTCATTCAAAGAGCAGCTAGCACAAAGAAAAGTTCGGaaacaacaaacaaacacaacGTTAGAAGGAACAGAACTCTCTCTTCATACCACAGATGGCAACACcatctctcttctttccctcgCACCCGACAGCAACACCACTTGGGGCAAAGCCCTTCCTTCTTCACTTCACAACGCTATGGTCGGCCACTGCATGATCTCGCGGCCAATCGTTGATGGATTCCCTTGGCCAATCGGACCCATGTCGGTGGAGAGGGAGGGGCGGCGTCGGTAA 2460 0.4386 MGGTHQQSQSYSANPADYKLLEEVGCGASATVYRAIYLPFNQLVAIKCLDLDRCNINLDDLRREAQTMSLIDHPNVMRAYCSFAVERSLWVVMPFMDEGSCLHLMKIAYTDGFEEDAIGSTLKETLKALHYLHQHGHIHRDVKAGNILLDSNGAVKLADFGVAACLFDAGDRHRSRNTFVGTPCWMAPEVLQPEGGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPSAEKLLKHSFFKHAKPPELSVKKLFADLPPLWNRVKALQLKDAAQLAVKKMPSAEEEAISQSQYQRGVSTWNFDIDDLKAQASLVRDDDDNAEMREEDENKFFTNYKAGAIDSQSSTGKMNSEKSPQNKITSQVGAIDIKQTEQSEYLNKKEKILESDLQEPGLPKNIIWKRNGSIMEATTSTVEKDIVISKIKGQSVKSHQTQSGPLLPGTVLSHSSSERGRTLERFENGNQLLGEKNIREVRRAPSFSGPLMLPTRASANSLSAPIKSSGGFSDSLDDKSKANLVQIKGRFSVTSENLDLVKDIPASSVSRQSSQGSLQKSTSVGDWMLESKQMPIGQATKDSATNNISASLLTTRLQNLFQQTSIQQELIVNLLNSLQSAEATEVSQNGKLPPLPRGSEINGSVDTAASERERLLLLKILGLQTRPASTSKGLKYFSALFSPQLHTNNLTRIQNPKSSSFKEQLAQRKVRKQQTNTTLEGTELSLHTTDGNTISLLSLAPDSNTTWGKALPSSLHNAMVGHCMISRPIVDGFPWPIGPMSVEREGRRR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1994 819 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1994 819 CDD STKc_OSR1_SPAK 17 279 - -
Ssu9g1994 819 Gene3D Transferase(Phosphotransferase) domain 1 99 331 - -
Ssu9g1994 819 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1994 819 SUPERFAMILY Protein kinase-like (PK-like) 17 337 IPR011009 -
Ssu9g1994 819 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Ssu9g1994 819 MobiDBLite consensus disorder prediction 467 487 - -
Ssu9g1994 819 Gene3D Phosphorylase Kinase; domain 1 6 95 - -
Ssu9g1994 819 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1994 819 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 701 - -
Ssu9g1994 819 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 701 - -
Ssu9g1994 819 MobiDBLite consensus disorder prediction 467 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1994 Ssu-Chr9 57989317 58012881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1994 6 696 MAP Kinase Kinase Kinase Kinase AT4G24100 64.841 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Ssu9g1994 Pkinase 8.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1994 - - gmx:100809903 1150.96