Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1987 ATGACCACTTCCCACGTTCTCGAGAAAGATCCAACCTCCAGATACGCGCGGTACGATGAAATGTTGGGGAAAGGAGCCTTCAAGACTGTATACAAAGCCTTTGACGAAGTGGACGGAATCGAAGTTGCATGGAATAGGATCAGCGTTGAGGATGCTGTGCAGACGCCGCAACAGTTGGGAAAGTTGTACTCTGAGGTTCACTTGCTCAAGTCCTTGAAACACGACAATGTCATCAAGTTGTATAATTCTTGGGTCGATGACACTACCGGCACCATCAACATGATCACTGAGTTGTTCACCTCCGGGAGTTTAAGGCAGTACCGGAAGAAGCATAAGAATGTGGATATGAAAGCAATCAAGAACTGGGCGCGGCAGATTCTCCGCGGCTTGTGCTTTCTGCACGGTCACAGTCCTCCTATTATTCATAGGGACCTGAAATGTgataatatttttgtcaatGGGAATAATGGACTGGTTAAGATTGGAGATCTTGGATTGGCAATTGTCATGCAGCAGCCGATTGCCCGGAGTGTCATTGGTACACCAGAGTTCATGGCCCCAGAGCTTTATGAGGAGGAATACAATGAACTTGTTGACATATATTCCTTTGGCATGTGTATCTTAGAAATGATCACCTGCGAGTACCCCTATAGTGAGTGTAAAAATCCAGCTCAGATATATAAGAAAGTTACCTCTgGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTGAAGTGAAGCAATTCATAGAGAAGTGTCTAGTTCCAGCATCTATGAGATTGTCAGCATCTGAACTACTGAAAGACCCATTCCTTGCAACTGAAAACATAAAAGAGATCAATCATGATACACTGCAGCTGCCTAATCCTCACACCAAATTGGTGAATCCACCTACGTGCGAACCTCATCCCATGGAGATAGATTCCAACTCCAGGCGTACTTCACCTGGCTCCTCTGTGGGAAAAATTGAAGAAACTTCTCAAGTTTCAATTTTGATCTTGTGA 1008 0.4395 MTTSHVLEKDPTSRYARYDEMLGKGAFKTVYKAFDEVDGIEVAWNRISVEDAVQTPQQLGKLYSEVHLLKSLKHDNVIKLYNSWVDDTTGTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHGHSPPIIHRDLKCDNIFVNGNNGLVKIGDLGLAIVMQQPIARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASMRLSASELLKDPFLATENIKEINHDTLQLPNPHTKLVNPPTCEPHPMEIDSNSRRTSPGSSVGKIEETSQVSILIL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1987 335 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Ssu9g1987 335 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 295 - -
Ssu9g1987 335 SUPERFAMILY Protein kinase-like (PK-like) 12 284 IPR011009 -
Ssu9g1987 335 SMART serkin_6 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1987 335 MobiDBLite consensus disorder prediction 299 323 - -
Ssu9g1987 335 ProSiteProfiles Protein kinase domain profile. 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1987 335 CDD STKc_WNK 14 273 - -
Ssu9g1987 335 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1987 335 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Ssu9g1987 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Ssu9g1987 335 PANTHER WNK KINASE 4 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1987 Ssu-Chr9 57947036 57948976 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1987 1 315 MAP Kinase Kinase Kinase AT5G41990 70.159 1.63e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu9g1987 Pkinase 7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1987 K08867 - gmx:100272202 638.262