Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1980 ATGGCTGAGCCTCTTAATATTACAACTCTAAGGAATAAGCTCAAGACGCTTTATGCTGTGGATGGCTGGTCTTACATCATTTTCTGGCGCATTCATCCACAAAATTCCTtATTGTTGACCGTGGAAGATGTATATTGTGAAGATCAATTGGGAGAAGAGATTGTCAACACGGTTCCTCAGGTTCATTTGATGGGCGAAGGAATTGTTGGTCACGCTGCTTTGACTGGCAAGCACAGATGGGTGGACTCAGATGGTCAAATGTGTgagGATGATTCTGGTTTGCATCAACAGTTCTCGTCTGGGATAAAGACAGTTGTGGTGATATCTTTTAAACCATGGGGAGTGGTACAATTTGGATCCAAAAAGAAGATTATGGAGAGAGTGAAATTTGAGGAACAAACAGAAAGGTTGCTCAGGGGGATAGAAGATGAGGGTATTCTTGATGTATTAAATAATACAGTTTTATCTCTAGAACGTGAAAATTGTGATCTAAATGGATTGTTGGCTTCCATTTCTTCTGAAAATTTATGTGATTGGAATCTCAAATCTGTTCATGGTGATAACTCTGAAATGCTATTGGGAAATTCTTGTTCCTCTGCAAGTCTTGATGATTCCTTCCCTTCCATGGGTATGATTCTTGAAGAAGGGACGACACCCATGCATGGATTTTCCTCTCACCTTGGAGACCAATTGGCACCTGCCATAGAAACTCAAGCCGTATTCTCAGATAGGGATAGTACTGATTATTCTATGAACAACTTAATTTCTAGAAACCCAAGTTTTGGCACATGGAGTGGCGAAATTTCATCATTGGATTCACTGGGGCAACAACCGGTATCTGAAATAAGGATTCAAGATGTTGCGGATGTCCACTGTAAAGAAGCAAATGCATTTTCTATTAACAAACTAGCAGTTCAGGATTCAAAATTGACCTCATTATATAGTGTGAATAGACTGTTAGACCCAACAGGCCCATTTCAAGACCACACAAGAAATTCAATGGATATCCAACATTCTGCTCAATCTAGTATTGTGACAGAAGTTAATTATCCTGGTAGTTTCAGTATGATGCGTGAGCTCTCCAAGGACTTAGATCCAGTTGATACATTAGAAGAATTTTCGAAGTTCTTCTTCATGGATGATCTCTGCCAGTTGTTAGCTCCTTCTCCAGAGCACAGCATTTGTGGAACAGTGACTGCATTGGATGAGTCACAAGAATTTAATCGCACGTCTTTTGGTCTGGTTGGTAGTAGTGCCATTGATGCTGTTCCAGTCACCTGTCAAGCTGCGCATAGTTCCATCATAGCTACAGCCAATTGGGATGGTCAAGAAACATCTACAGTTATGCATAGTTCTGAAAGCATGGGACATGATTTGAGCTGTGACCAAGTTGAGGAGTGGTGGGGCAGTATGGCTATGCTTACACCAGCGGTGAGTACTGCTGCTACTGACTCTGCTTTCTCTGATTGCATATCAGGGTTGAATGTTGGTACATTAGGTGGCTCTGGGAAGAGATTATTCTGTGAGTTAGGAACTGAAGAGTTTTTGAATGGTTCTGATTTTGAAGATCAATTAACCAATAGAAGACAGAGGACAGAATATTCACCAGAGATTAGAAATCCAAAGCAATTGGCAAGTCATGCTTTGGTGCAGCCTATTCCTAAATTGGACATGACAAACAATCTTGTACACAAGAAAGAGATATTCACAAAGTCACAGGTAGGAGTAGGAGGCTTGTGGATTGATGACAGAAATAGTAATACTGGGAGGACTGGTCCAGCACATGCACAGCCTCAAAAGCCAGTGGAACACAATAAGGTCACCAGGAAGAGGGCTAGGCCGGGCGAAACAACTCGACCGAGACCAAAAGATCGTCAGCAGATTCAAGACCGCATTGGAGAATTGAGAGGAATCGTCCCCAATGGTGGAAAATGTAGCATTGATTCTTTGTTAGACCGAACCATCAGATACATGATATTCCTACAAAGCATCACCAAGTATGCAGACAAGCTACAAGAACCCAATGAGCCAAAGCTCATTGAGCAGGCAAATGGAAAGGTTCCAAAAGACAGTAGCGTAGGACATTGCAAAAGAGGTGGTGGTGGCGTTACATGTGCATTTGAAGTGGAAGGCCAAACAATGGTATGCCCAATTATAGTGGAGGACATGGGCCCACCTGGCCAAATGCTTATAGAGATGCTTTTTGAAGAGCAGGGCTCCTTCCTTGAGATAGTGGACATCGTTGGGGGGTTTGGGTTGAATATCTTGAAAGGAAAGATGGAAATCAGGGAGAATAAAATATGGGCACGCTTTATTGTTGAGGCGAACAGACATGTAACGAGGATAGATGTTTTTTGGTCCCTCGTCCGTCTTCTACAGCAGAAAAACACATCTGGAACGGATTCAGATAATAAGCGTTGTGATATTAATGATGTTGGCTTTTCTTCAATGGACAAGTTTGAGAAAACAGATATGCCGGTACTACCCATGGTCATGACAAAGACAGTTAGATGA 2514 0.42 MAEPLNITTLRNKLKTLYAVDGWSYIIFWRIHPQNSLLLTVEDVYCEDQLGEEIVNTVPQVHLMGEGIVGHAALTGKHRWVDSDGQMCEDDSGLHQQFSSGIKTVVVISFKPWGVVQFGSKKKIMERVKFEEQTERLLRGIEDEGILDVLNNTVLSLERENCDLNGLLASISSENLCDWNLKSVHGDNSEMLLGNSCSSASLDDSFPSMGMILEEGTTPMHGFSSHLGDQLAPAIETQAVFSDRDSTDYSMNNLISRNPSFGTWSGEISSLDSLGQQPVSEIRIQDVADVHCKEANAFSINKLAVQDSKLTSLYSVNRLLDPTGPFQDHTRNSMDIQHSAQSSIVTEVNYPGSFSMMRELSKDLDPVDTLEEFSKFFFMDDLCQLLAPSPEHSICGTVTALDESQEFNRTSFGLVGSSAIDAVPVTCQAAHSSIIATANWDGQETSTVMHSSESMGHDLSCDQVEEWWGSMAMLTPAVSTAATDSAFSDCISGLNVGTLGGSGKRLFCELGTEEFLNGSDFEDQLTNRRQRTEYSPEIRNPKQLASHALVQPIPKLDMTNNLVHKKEIFTKSQVGVGGLWIDDRNSNTGRTGPAHAQPQKPVEHNKVTRKRARPGETTRPRPKDRQQIQDRIGELRGIVPNGGKCSIDSLLDRTIRYMIFLQSITKYADKLQEPNEPKLIEQANGKVPKDSSVGHCKRGGGGVTCAFEVEGQTMVCPIIVEDMGPPGQMLIEMLFEEQGSFLEIVDIVGGFGLNILKGKMEIRENKIWARFIVEANRHVTRIDVFWSLVRLLQQKNTSGTDSDNKRCDINDVGFSSMDKFEKTDMPVLPMVMTKTVR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1980 837 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 8 827 IPR043561 GO:0003700|GO:0006355
Ssu9g1980 837 MobiDBLite consensus disorder prediction 602 627 - -
Ssu9g1980 837 MobiDBLite consensus disorder prediction 580 627 - -
Ssu9g1980 837 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 58 133 IPR025610 -
Ssu9g1980 837 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 612 661 IPR011598 GO:0046983
Ssu9g1980 837 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 8 827 - -
Ssu9g1980 837 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 625 667 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1980 Ssu-Chr9 57858746 57863662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1980 609 802 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.577 4.39e-59 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1980 - - pvu:PHAVU_006G000400g 1267.68