Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1979 ATGACGGAAGTGGCGAGATCAGTGGTGCACGACGTTTTGGGACAAAGAGTCGTCGACGTGGACCAGCCAATCGTGGATTACATCGTCAACGTCCTCGCCGACGATGACTTCGATTTCGGCCCCAACGGCGAAGGCGCCTTCGAAGCCCTCGGCGAGCTCCTCGTCGCCGCCGGATGCGTCGACGATTTCTCCGAGTGCCGCTCCGTGTGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGCGAAGGCGAAGCCCACGGTGCGAAGCCTCGCGGCGCCGTTTCGAATGAACGACGGAATGGAAGACGTCCAAGCTCCCAAGAAGAAGCCCGAGCCCATCGACGGCCCTCTGCTTTCGGAACGCGACCGTTTAAAGCTCGAGAGGCGAAAGCGCAAGGAGGAGCGCCAGCGAGAGGCACAATACCAAATGCACTTGGCGGAGATGGAGGCTGCACGGGCCGGGATGCCGGTGGCGTGCGTGAGGCATGACAGCAGTGGGGGACCAAACGTGAAGGACATTCACATGGAGAATTTCAATATCTCTGTTGGTGGGCGTGATCTCATTGTGGATGGTTCTGTCACACTTTCTTTTGGGAGGCATTATGGTTTGGTAGGAAGGAACGGGACGGGGAAAACCACTTTCCTAAGACACATGGCAATGCATGCCATTGATGGTGTTCCGAGGAAGTGTCAGATACTGCATGTGGAGCAAGAGGTGACAGGTGATGATACGACGGCCTTGCAGTGTGTCCTCAACTCTGACATTGAGAGGACTCAGCTTCTCGACGAAGAAGCTCAGTTACTTGCCAAACAGAGGGAATTTGAGGACAAAATTGAAAAGGGTGATTCAAACGGAGTGGTCGATAGAGATGGCATTTCACAAAGGCTTGCAGAAATATATAAGAGGCTTGAACTCATTGATGCTGATTCTGCAGAGGCACGGGCAGCATCGATACTAGCAGGTTTGAGTTTCTCACCTGAGATGCAGAAGAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATGTTGCTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATTGTACTTGGTTAAATGGCCAAAAACATTTATTGTTGTTTCTCATGCTAGGGAATTTTTAAACACGGTGGTTACTGATATAATTCACTTACAAAACCAAAAGCTGACTACTTATAAAGGGAATTATGATACTTTTGAGAAGACTCgagaagaacaaattaaaaaccaGCAAAAAGCATTAGAGGCAAGCGAACGTGCAAGATCTCATATGCAGACCTTCATTGACAAGTTCCGATATAATGCAAAGAGGGCATCACTTGTTCAATCTAGAATCAAGgCTTTGGAGCGAATGGGTCATGTAGATGAAATTGTTAATGATCCTGACTACAAATTTGAGTTCCCCACTCCAGATGATAGACCTGGCCCACCAATAATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTGTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGTATTGCAATGGTTGGACCAAATGGCATTGGCAAATCAACTATACTTAAGTTAATTGCTGGGGAACTACAGCCCAGTTCTGGGACTGTCTTCCGTTCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCACCATGTTGATGGACTGGACTTATCCTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACTGGAAATCTTGCACTGCAGCCAATGTATACTTTGTCAGGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATAACTTTTAAGAAGCCACACATAATATTGCTTGATGAGCCGTCCAATCATCTGGATTTGGATGCTGTTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCATCTCATCTCTGGAAGCGTGGAGGAACTATGGGTTGTATCCGAAGGAAGAGTGACACCATTCCATGGCACATTCCAAGATTATAAGAAGATACTCCAATCATCCTAG 2139 0.4741 MTEVARSVVHDVLGQRVVDVDQPIVDYIVNVLADDDFDFGPNGEGAFEALGELLVAAGCVDDFSECRSVCSTLCDKFGKHGLAKAKPTVRSLAAPFRMNDGMEDVQAPKKKPEPIDGPLLSERDRLKLERRKRKEERQREAQYQMHLAEMEAARAGMPVACVRHDSSGGPNVKDIHMENFNISVGGRDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGVPRKCQILHVEQEVTGDDTTALQCVLNSDIERTQLLDEEAQLLAKQREFEDKIEKGDSNGVVDRDGISQRLAEIYKRLELIDADSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLELYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDTFEKTREEQIKNQQKALEASERARSHMQTFIDKFRYNAKRASLVQSRIKALERMGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGRVTPFHGTFQDYKKILQSS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1979 712 ProSitePatterns ABC transporters family signature. 621 635 IPR017871 GO:0005524
Ssu9g1979 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 432 IPR027417 -
Ssu9g1979 712 CDD ABCF_EF-3 175 411 - -
Ssu9g1979 712 SMART AAA_5 527 694 IPR003593 -
Ssu9g1979 712 SMART AAA_5 199 411 IPR003593 -
Ssu9g1979 712 Pfam ABC transporter 405 485 IPR032781 -
Ssu9g1979 712 Pfam ABC transporter 194 366 IPR003439 GO:0005524
Ssu9g1979 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 434 IPR003439 GO:0005524
Ssu9g1979 712 Gene3D - 125 447 IPR027417 -
Ssu9g1979 712 Gene3D - 464 712 IPR027417 -
Ssu9g1979 712 Pfam ABC transporter 519 649 IPR003439 GO:0005524
Ssu9g1979 712 PANTHER NON-TRANSPORTER ABC PROTEIN 121 711 - -
Ssu9g1979 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 711 IPR003439 GO:0005524
Ssu9g1979 712 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524
Ssu9g1979 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 704 IPR027417 -
Ssu9g1979 712 CDD ABCF_EF-3 502 694 - -
Ssu9g1979 712 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1979 Ssu-Chr9 57830664 57844118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1979 458 663 Calmodulin-binding Proteins AT2G36910 26.337 2.53e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1979 K06158 - gmx:547980 1328.54