Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1976 ATGAGTCTTCCACAAGCTGCAACTAGCCCTCCTCCACATCTGTATCCACAGGAACTTCAGCTGAAGCTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCtatcattctctttctcttgttCTACTTGTTCTACCTCAAGAGGAGGgcttcctctctctcttcctcttctccccACTTGCTTCCAAGGACCATTGCCAATCCACCAACCACCACTCGCTATCATTCCTCACCTTGTCGTTTGGATCTGACCCTGCAATTCCTGGATAAACTTCCAagaattttatttgatgaaGATTTGCTAGCAAGGGATTCACtATGTTGTGTTTGTCTGGGGGAATTTGAGCTGAAAGAAGAGGTGCTTCAGATTCCTTATTGCAAGCACGTGTTCCACTTCGATTGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAATCCAGCACCGcctattaatattatatcagACCCACCCCAGCATGGTGCTATCATTTCGGACTCTCCATTACAAATTCTATCATTGCCACCTCAGCCACAAGATCACGAAGTTGGTGCTTCCTCAAATGCTACTAATTTGTCAAGGGAATGA 636 0.3978 MSLPQAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPHLLPRTIANPPTTTRYHSSPCRLDLTLQFLDKLPRILFDEDLLARDSLCCVCLGEFELKEEVLQIPYCKHVFHFDCIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISDPPQHGAIISDSPLQILSLPPQPQDHEVGASSNATNLSRE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1976 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 166 - -
Ssu9g1976 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 156 IPR013083 -
Ssu9g1976 211 Pfam Ring finger domain 109 151 IPR001841 -
Ssu9g1976 211 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 166 - -
Ssu9g1976 211 SUPERFAMILY RING/U-box 87 162 - -
Ssu9g1976 211 SMART ring_2 109 150 IPR001841 -
Ssu9g1976 211 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1976 Ssu-Chr9 57784779 57786386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1976 1 156 C3H Transcription Factor Family AT4G10150 39.130 2.45e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1976 K19039 - gmx:100794298 339.347