Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1956 ATGGACAAGGCAGCTACTGTACTTCAAAGTGAGGCAGCAGATCCTTCTCTTCTTCTTGACCATCAGACTTGTGCTGGAAATGGTGAAGGTGACAGGACCTCCTTGATTCCAGAGTCCAGAAGACCAAGTCTCTCCTCTCTGCAAATACCGGCAAGGTCAGTGGAAAATGCATTATCTTCTTTAAGCAAGACAGATGGTCCTACATTGATCTCAAGTCCAGGTTCCAGTAAAGGACTGCCCCCAAGGCCAAATTCAGCCAGAGTCAAGTCCTCTATGAGTATGAGAAGTTTACTCTCTGAGAGGAGCTTTAGGGCTAAGAACTGTTCACAAGATTGTGAAAGGACAGTTCTGATTGTTCCTGATGCCTTACCATCAGATGCTCCTGTGGATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCCCTTCATCAATTAAAGCAGCACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGAATGGACATGATGGAAGACATCTGGGGTGTGATTCTGATTTAAGTAAAGTGGAAGTAAATCAGCACATGACTCGATCGTTTTCGGTTCCTGTTAATGTTAAAGCCGCTAATTTAAGGCCTACAGATTCTAGGAGCCTGATTCGTGTAATTTCAGCAAGATCACTAAGAGCAACTATTGGTGGCATTTCAACTCAGAATGCTTCAGGATCCGAGATTGTTCCAGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAACACTCTTAGGATGGACTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACTTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTGCTCCACCGCCATTGAATGCACCAGGACCACAGCAGAGAGAAGTAACTTATTACAGGATATGGCAGGATGTATCAGTACTTATCTTGGTCAGCATGCTTgcatacttttgttttcttgagGAACTACTGGTTTCAGATTTGGGCACTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCTTCAACCATGGTGAGTGGGAGTTATATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACTATACTTAATGTTAATGCCATCCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGCTAACGGAATATATTAGATGGAGAACAAGAAGACTGATTCAATCTTCTACGACACAGCAGCAGCGCCGTTATCATGCACAGCAGCAGCAAGAACATCAAAGACAGCGTCATCAACTGCAAAGGCAGCAGCAAGAGCAGCACCAATGA 1494 0.4284 MDKAATVLQSEAADPSLLLDHQTCAGNGEGDRTSLIPESRRPSLSSLQIPARSVENALSSLSKTDGPTLISSPGSSKGLPPRPNSARVKSSMSMRSLLSERSFRAKNCSQDCERTVLIVPDALPSDAPVDKPSTSRSLSLNKILFPSSIKAAHSLPVTPTANSGAENGHDGRHLGCDSDLSKVEVNQHMTRSFSVPVNVKAANLRPTDSRSLIRVISARSLRATIGGISTQNASGSEIVPVNEDASEDIPEEDAVCRICLVELGEGGNTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKISNPQTVAPPPLNAPGPQQREVTYYRIWQDVSVLILVSMLAYFCFLEELLVSDLGTRALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLLTEYIRWRTRRLIQSSTTQQQRRYHAQQQQEHQRQRHQLQRQQQEQHQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1956 497 SMART ringv_2 255 304 IPR011016 GO:0008270
Ssu9g1956 497 SUPERFAMILY RING/U-box 252 307 - -
Ssu9g1956 497 Pfam RING-variant domain 256 303 IPR011016 GO:0008270
Ssu9g1956 497 PANTHER OS02G0165000 PROTEIN 13 482 - -
Ssu9g1956 497 MobiDBLite consensus disorder prediction 472 497 - -
Ssu9g1956 497 PANTHER OS02G0165000 PROTEIN 13 482 - -
Ssu9g1956 497 CDD RING_CH-C4HC3_MARCH 256 304 - -
Ssu9g1956 497 Coils Coil 474 494 - -
Ssu9g1956 497 MobiDBLite consensus disorder prediction 476 497 - -
Ssu9g1956 497 ProSiteProfiles Zinc finger RING-CH-type profile. 248 310 IPR011016 GO:0008270
Ssu9g1956 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 312 IPR013083 -
Ssu9g1956 497 MobiDBLite consensus disorder prediction 38 79 - -
Ssu9g1956 497 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1956 Ssu-Chr9 57444627 57453215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1956 240 310 C3H Transcription Factor Family AT2G37950 43.243 2.52e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1956 - - gmx:100779396 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1956 9 57444627 57453215 Ssu6g3713 6 81184309 81190213 PCT