Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1936 ATGGAGTCCTCTGTTGATGTATCAGCAGCAAAACGCCCCCGACCCACCGGATTTTCCCCTAGCCCTGAGCTACACAAAAGACTGAAGTTTTCAAGTGATTTCCCAGCACATGATAAGACTTCAAATGTTGTTGATTACAGCAATCCATTCACAGTATCTGCTGTTCTGGATCGTTTAGAGAGTGGAAAATATGGAAGTGTCACAAAGGACATAGAGGCCCTTATAGCCCAAAAAATGCAAATACTGGGCCCTTACTTTGCAAAATATCCCATACTTGTTAATCAATTATCGAAAGTGGTAATGGACCACAATGAAGAAACTCCTAAGTTGGAAAATCAACAAGTTACTGGTTCGAAACATCAAAATTTCATAGATTTGGAGGGGGAACACACTGAAAAGGATGTTCCTGCAGTACCAAATCCTGTTGTGATTATTGATTCAGATGAGGAAGATGATAGAGATCAAAAATCTATTGTTCCATTTCATGAAGTTGTGTTGCCGAGACTAGTTGCGCCGTCTCCTGCATTGAAGATGATTGGGTATCATAGTCCCATTCCTTACCCGGGAGAAAGAGAAGATCTAAAGGTTGAGACAAGTATGGCTGGTAAGGGTAACAACACTAGGAGCAATAAAGGTGTTTATATTGGTGTacaggaggaggaagaagatcAGGATGATACTGAAGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGTGAATCCTCTGTCGGATGAAGAAGTGAAAGAAGATGACGATTGTGatcattcttttgttttaaaagatgaTCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACCGCGGAATTGAAACCATATTTGAGTTTCAGTACAAGgtTAAACGGAGCACAAGAACTTATGCGTCTGATTCATGGAATACCAAAGAAAAAGCAGATGTATTTGGAATTAATGTTGCTGCAGATGATCTCATGGTAACTGAAATCTCAGCGCATCCTAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGTGGGTGACCATCCTGGAGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTACCCTAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAACCTGGCAAGTGGAGGACATCCCCCTATATGACTTTTACACTGTGAAGGCTGATAGTAGAAGTCAACAACTCGAAGTGTTGAAGCAATGGATGGAGCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCCATTGTTTGTGATAATGGGACCAACAAGACATCTCTATCTTGCCAGGAGATTTTACTCAAGGTTCCTTCGATTCTTATTTTAGATGAAGGACACAATCCAAGGAATGAAAACACAGATATGGTACAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTATCAGGAACCCTTTACCAGAATCATGTCAGGGAGgtgtttaacattttaaatcttGTTCGGCCAAAGTTTTTGAAGATGGAAACATCTAGGCCTATTGTCAGGCGCATTCATAGTAGAGTTCATATACCGGGTGTGAGAAGCTTCTATGATTTAGTTGAAAACACTTTGCAAAAGGACACggattttaaaaggaaagtggCTGTCATTCAAGATTTGCGTGAGATGACAAGCAAGGTGCTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTACTCACTCTTAGCCCTAGACAGAAGCCTGaagttgagaaattaaaaaggctGTCTAGAAAGTTCAAGATATGTTCTGTAGGCAGTGCTGTCTATCTGCATCCTAAACTGAAACCTCTAGCAGAAAAATGTGGTGAAAATTCTATATCAGATAATATAATGGATGATTTGATAGAGAAATTAGATGTGAGAGATGGTGTGAAGTCTAAATTCTTTCACAACGTGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTGGTTTTTAGTCAATATCTGTTACCTTTGAAATATTTAGAAAGGTTGACTATGAAATGGAAGGGCTGGAGTCttggaaaagaaatttttgtaatCTCAGGAGAATCAAGCTCTGAGCACCGAGAATGGTCCATGGAAAGATTTAACAATTCTCCTGATGCAAAAGTCTTCTTTGGGTCGATCAAGGCATGTGGAGAGGGGATTTCATTGGTTGGGGCATCCCgcataattattttggatgttCATCTCAATCCATCAGTTACTCGTCAAGCTATAGGTCGTGCATTCAGACCAGGCCAGAAGAAGAAAGTCATCGTGTATCGATTGGTGTCTGCTGATTCTCCTGAAGAGGAAGATCACAGTATTTGTTTCAAGAaggaattaatttcaaaaatgtggTTTGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGCGATCTCTTTCTTGAAAGTGCACTGTTAGGGGAGGATGTAAAAGCTTTGTATAAAAGGTAG 2628 0.3817 MESSVDVSAAKRPRPTGFSPSPELHKRLKFSSDFPAHDKTSNVVDYSNPFTVSAVLDRLESGKYGSVTKDIEALIAQKMQILGPYFAKYPILVNQLSKVVMDHNEETPKLENQQVTGSKHQNFIDLEGEHTEKDVPAVPNPVVIIDSDEEDDRDQKSIVPFHEVVLPRLVAPSPALKMIGYHSPIPYPGEREDLKVETSMAGKGNNTRSNKGVYIGVQEEEEDQDDTEDDGLEDIWKEMSMAIECSKDVSVNPLSDEEVKEDDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYASDSWNTKEKADVFGINVAADDLMVTEISAHPRHMKQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEQKSILFLGYKQFSSIVCDNGTNKTSLSCQEILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSRPIVRRIHSRVHIPGVRSFYDLVENTLQKDTDFKRKVAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEVEKLKRLSRKFKICSVGSAVYLHPKLKPLAEKCGENSISDNIMDDLIEKLDVRDGVKSKFFHNVLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGKEIFVISGESSSEHREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVIVYRLVSADSPEEEDHSICFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDLFLESALLGEDVKALYKR 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1936 875 Pfam Helicase conserved C-terminal domain 690 798 IPR001650 -
Ssu9g1936 875 Gene3D - 607 864 IPR027417 -
Ssu9g1936 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 837 IPR027417 -
Ssu9g1936 875 Pfam SNF2-related domain 364 573 IPR000330 GO:0005524|GO:0140658
Ssu9g1936 875 MobiDBLite consensus disorder prediction 1 24 - -
Ssu9g1936 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 358 537 IPR014001 -
Ssu9g1936 875 SMART ultradead3 340 550 IPR014001 -
Ssu9g1936 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 688 851 IPR001650 -
Ssu9g1936 875 Gene3D - 312 556 IPR038718 -
Ssu9g1936 875 CDD SF2_C_SNF 690 810 - -
Ssu9g1936 875 SMART helicmild6 714 799 IPR001650 -
Ssu9g1936 875 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 30 875 IPR044567 GO:0080188
Ssu9g1936 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 539 IPR027417 -
Ssu9g1936 875 PANTHER PROTEIN CHROMATIN REMODELING 35 30 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1936 Ssu-Chr9 57023232 57030113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1936 696 827 RAD5 or RAD16-like Gene Family AT5G43530 33.333 8.81e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu9g1936 SNF2_N 9.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1936 K10875 - gmx:100780454 1550.41