Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1935 ATGGGTCGGTGCCGAACTGTGTCGCGCCCCGTTGCTGACGATGACCCCGACCATAATAGATCAAAGAGAAAAAGGGCAGCTCTGAATGTAGAAAATTCAGAAACTTTACCTACAGGCCAAGGAATAACTAAGAGCAAGGTATCTCTTTATCACTGTAATTATTGTAACAAAGATATTTCGGGGAAGATTCGCATCAAGTGTGTTGTGTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCTCACAAAAGCAATCATCCGTATCGGATTATGGATAATCTATCCTTTCCACTTATATGTCCAGACTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGGCATTGAGATGTATGGATTTGGAAATTGGAATGAAGTTGCAGAATATGTTGGAATGAAAAGCAAAACTCAATGTATTGACCACTATAATGCTGTATATATGAATTCGCCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGAGGAACTCATGGCGAAGGGACATGAAGTCAGGAAAGAATTTCCTCTAACTGCCGAGCTTACTCTGAAGGAAGAACCTCCCTTCTCTAATGGAATAAACTATGAAGAATCGAAGAAGGCAGAaatcaataatcaaacaatttCTAGTTTAACCTCAGGTTCAGCATGTGGCAAAGCTTACTCAAGCACAATTAAGAGGGCTTCCAATGTGAGCCAAAATAATGATGGAGTTAAGGTGGAAGAGTCTCAATCAGATCGTAGCATTGGAGAGAAGAAACTTAAATTATCAGGGGAAGATAGGCCTTCTATGACAGAGTTGAGTGGATACAGTTTTAAGCGAGAGGAATTTGACGTTGAATATGACAATGATGCAGAGCAAGTGTTGGCAGATATGGAATTTAAGGACACTGATACTGAAGCTGAACATGAAATGAAACTGCATGTGCTCCATATCTACTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGAATTTTATACTTGAAAGAGATTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGCGTTACAAGGTCTTCATGCGGTATCACTCAAAAGAAGAACATCAGgatttgctaaaaaatattattgaagaacACAGGCTTGTCAAAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTGCTGATGCTTATCGATTTATTGAACAAAAGAGGACAAAGGAAGCTGAACCAAGTGCCTGTAAAGAAAGTGGTCAGATTGGAACAAGTGCTAAGACATTGCAGAGGCCAAATTATCTCAAAGGAGAACTTGATAGTAGCCCACGGGGTCTTCAAAAGGGGACTACGGCTTTATTTGCTGGTGCCAAGGATTCACCTACTGCCATACAAGCCATCACTAGGTCGATAGAAGAGTGGGATATTAGTGGATTTGCAGGGGCTGAATTACTATCTGAATCTGAGAAAAAGCTTTGTAATGAGATCAGATTGCTACCGTCACACTATCTCAACATGCTGCAGACCATGTCATTAGAAATTTCAAAGGGCACGGTGACCAAGAAATCTGATGCACATACACTGTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTACGATATGCTTGCGGAAAAAGGAGTTGTGCAAACATAA 1689 0.4008 MGRCRTVSRPVADDDPDHNRSKRKRAALNVENSETLPTGQGITKSKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAEVTPHKSNHPYRIMDNLSFPLICPDWNADEEMLLLEGIEMYGFGNWNEVAEYVGMKSKTQCIDHYNAVYMNSPCFPLPDLSHVMGKSREELMAKGHEVRKEFPLTAELTLKEEPPFSNGINYEESKKAEINNQTISSLTSGSACGKAYSSTIKRASNVSQNNDGVKVEESQSDRSIGEKKLKLSGEDRPSMTELSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTEAEHEMKLHVLHIYSKRLDERKRRKNFILERDLLYPDPFEKSLLPEELQICQRYKVFMRYHSKEEHQDLLKNIIEEHRLVKRIQDLQEARIAGCVTAADAYRFIEQKRTKEAEPSACKESGQIGTSAKTLQRPNYLKGELDSSPRGLQKGTTALFAGAKDSPTAIQAITRSIEEWDISGFAGAELLSESEKKLCNEIRLLPSHYLNMLQTMSLEISKGTVTKKSDAHTLFKVEPSKVDRVYDMLAEKGVVQT 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1935 562 ProSiteProfiles SWIRM domain profile. 476 562 IPR007526 GO:0005515
Ssu9g1935 562 MobiDBLite consensus disorder prediction 1 25 - -
Ssu9g1935 562 ProSiteProfiles Myb-like domain profile. 110 153 IPR001005 -
Ssu9g1935 562 SUPERFAMILY Homeodomain-like 103 156 IPR009057 -
Ssu9g1935 562 CDD ZZ_ADA2 50 98 IPR041983 -
Ssu9g1935 562 Gene3D - 43 98 IPR043145 -
Ssu9g1935 562 Gene3D - 104 155 - -
Ssu9g1935 562 ProSitePatterns Zinc finger ZZ-type signature. 52 79 IPR000433 GO:0008270
Ssu9g1935 562 MobiDBLite consensus disorder prediction 242 273 - -
Ssu9g1935 562 PIRSF Txn_adaptor_ADA2 38 562 IPR016827 GO:0003713|GO:0006357|GO:0035065
Ssu9g1935 562 Pfam Zinc finger, ZZ type 50 90 IPR000433 GO:0008270
Ssu9g1935 562 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 12 561 - -
Ssu9g1935 562 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 12 561 IPR034318 GO:0003713|GO:0006357|GO:0035065
Ssu9g1935 562 SUPERFAMILY RING/U-box 50 113 - -
Ssu9g1935 562 CDD SANT 110 150 IPR001005 -
Ssu9g1935 562 Pfam Myb-like DNA-binding domain 109 150 IPR001005 -
Ssu9g1935 562 ProSiteProfiles SANT domain profile. 105 157 IPR017884 -
Ssu9g1935 562 MobiDBLite consensus disorder prediction 8 25 - -
Ssu9g1935 562 ProSiteProfiles Zinc finger ZZ-type profile. 47 103 IPR000433 GO:0008270
Ssu9g1935 562 SUPERFAMILY Homeodomain-like 477 561 IPR009057 -
Ssu9g1935 562 SMART sant 106 155 IPR001005 -
Ssu9g1935 562 SMART zz_5 46 91 IPR000433 GO:0008270
Ssu9g1935 562 MobiDBLite consensus disorder prediction 251 271 - -
Ssu9g1935 562 Gene3D - 477 561 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1935 Ssu-Chr9 57006741 57020068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1935 1 559 EF-hand Containing Proteins AT3G07740 53.229 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu9g1935 Myb_DNA-binding 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1935 K11314 - gmx:100779424 999.579