Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1916 ATGCTAACTAAGATCTTGTTCATGAAGTCCAATGCTTATAATTTAATCCCGTTTGCTCAATTTGCCATTTGGAACCTTTGGCGTCAAATTATTAGCATACTTCTTGGATCCTGTCTTGCAGCAATTCTACTTCCTATTTCCCCAATTCCTTGTTTGTCCATTCTGCTGGGTTCCAAGATAAACAATCATCCACTTGCAACACAATTTGGTATCAAAATGGGCCTCTCAAGTCTACCAGCACCATCTGAAGGAGTGTTATGTGTGCTTCTTGTAAACACTGCCTTGTCTATATCCATATTCAAAGGCATTGTTAGGACAATTCTACACATTGTTGGTATCCGTGTTGCATCATCTCCTTCACCAGACATCTCCCAAAACCCACCTGAGTCATTTGAATTCCACCTCAGTCCCTCAGAAGGTCTCATTGAAGAGTTCAGAAGCAGGACACCAACACTTAGGTTTGGCAGCATGTGTGACTGTAAACAACCTCAACATGATTGTTGTGTGTGTCTCACTAAGTTTGAACCAGAATCAGAGATAAACCGTTTATCCTGTGGCCATCTTTTTCACAAAGTGTGCTTGGAAAAATGGTTGGACTATTGGAACATTACATGCCCACTTTGCAGGACTCCCTTGATGCCTGAAGATGATGCATCTTGCTTTTGGTAA 669 0.4141 MLTKILFMKSNAYNLIPFAQFAIWNLWRQIISILLGSCLAAILLPISPIPCLSILLGSKINNHPLATQFGIKMGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRTILHIVGIRVASSPSPDISQNPPESFEFHLSPSEGLIEEFRSRTPTLRFGSMCDCKQPQHDCCVCLTKFEPESEINRLSCGHLFHKVCLEKWLDYWNITCPLCRTPLMPEDDASCFW 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1916 222 PANTHER - 73 222 IPR044249 -
Ssu9g1916 222 Pfam Ring finger domain 166 209 IPR001841 -
Ssu9g1916 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 73 222 - -
Ssu9g1916 222 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Ssu9g1916 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 214 IPR013083 -
Ssu9g1916 222 SUPERFAMILY RING/U-box 166 214 - -
Ssu9g1916 222 SMART ring_2 167 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1916 Ssu-Chr9 56778116 56779635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1916 73 216 C3H Transcription Factor Family AT2G04240 62.338 1.05e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1916 K16285 - gmx:100306440 282.722