Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1915 ATGGGttatatatgtgatttttgtgGAGAGCAGAGGTCCATGGTGTACTGCCGCTCTGATGCTGCATGCTTATGTTTGTCATGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCTCGGCGTCATTCACGGACCCTTTTATGTGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTGGGTCATGGCACCTCTACATCTTCTTCAACACATAAGAGACAAGCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGTGGAACTGTCTTCAATATGGTCATTTGTGTTAGATATCCCTGCCATAAGTGAATCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAACAAGAGTGTTGGGGTTTCTCCAGAAAACCAGGATGTGTTTGGTTCAGATCAAGTTACTGATCTACCTGCTTTGGACAAGTCTTTGGTTGGTACATCTTCAATGCCTGAGTCAAGCTCTCAACCTCGTATTCTGGACCAGCCAGCTGGATCTGCCAATGAATGTCTGCCAAAGTTATACTGTCCTGCTACAAAATGTCCTGCATTATGTGAAGATGATGATCTATATGACGATTTCAACATGGATGAAGTAGATCTAAATCTTGAGAGCTATGAAGAACTTTTCGGTGTGACCCTCAGTCATTCTGAAGAGCTATTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAGGACATGTCTGCTGGAGATTCCAATTGTCAGGATGCTATTGCTGCTGAGGGGTCATCAGTTGGACTGGTCAGTGCAATGCAACCAGCTTGCAGCAATGGAGCATCTGCAGATTCCATTTTGAGTACTAAAACTGAACCAGTTCTTCGTTTTACGGGAAGGCAAGCCCAAtcaaacctttctttttctggCATCACTGGAGAGAGTAGTGCTGGAGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCCTACAATCTGCCAACCGCAGTAATGCTGTCATGCGTTACAAGGAAAAGAAGAAGGCACGGAAGTTTGACAAAAGAGTAAGGTATGCCTCTCGCAAGGCAAGGGCTGATGTCAGAAAGCGTGTGAAAGGCCGGTTTGTCAAAGCTGGCGACATCTACGATTATGACCCATTGAGCACAACCAGAAGCTACTGA 1233 0.4331 MGYICDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAVELSSIWSFVLDIPAISESTCEQELGLMSINENNKSVGVSPENQDVFGSDQVTDLPALDKSLVGTSSMPESSSQPRILDQPAGSANECLPKLYCPATKCPALCEDDDLYDDFNMDEVDLNLESYEELFGVTLSHSEELFENGGIDSLFGTKDMSAGDSNCQDAIAAEGSSVGLVSAMQPACSNGASADSILSTKTEPVLRFTGRQAQSNLSFSGITGESSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVMRYKEKKKARKFDKRVRYASRKARADVRKRVKGRFVKAGDIYDYDPLSTTRSY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1915 410 CDD Bbox1_BBX-like 4 47 - -
Ssu9g1915 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 410 - -
Ssu9g1915 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 410 - -
Ssu9g1915 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ssu9g1915 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Ssu9g1915 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Ssu9g1915 410 CDD Bbox1_BBX-like 47 90 - -
Ssu9g1915 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Ssu9g1915 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Ssu9g1915 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1915 Ssu-Chr9 56761311 56765578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1915 1 410 C2C2-CO-like Transcription Factor Family AT3G07650 56.501 1.57e-156 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu9g1915 CCT 4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1915 - - gmx:100800832 734.176