Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1914 ATGGCTTCCAGAAAATCCGATAACCCTCACTCGGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACTACCTTAGGTCACAAACAACAcaacattacatttttttcctttttaattaaattttataattatttatttattggattggattttggTTGCACAGAGACGTTCGTGAAGTACTTTGAGAAGTACGGCGAGATAACGGACTCCGTTATCATGAAGGACCGTCACACGGGTCGACCCAGGGGCTTCGGCTTCATCACCTACGCGGATCCCTCTGTCGTTGACCAAGTCATTCAAGAGAACCACGTCATCAACGGCAAACAGGTCGAGATTAAGAGGACCATCCCCAAGGGTTCCTCACAGGCTAATGACTTCAAAACCAAGAAGATTTTCGTCGGCGGTATTCCAACATCAGTATCTGAAGATGAGTTGAAGAACTTCTTCTCTAAGTATGGGAAGGTTGTGGAGCATGAGATTATACGGGACCACACCACGAAGCGATCTAGGGGCTTTGGCTTTATAGTGTTCGACAGTGAAAAGGTTGTGGATAATATTTTGGCAGATGGGAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACGTTCTTATAATGATGGTTTCAGTGGATTTGGCGATTCTTATGGAAGTTTTGGTGGTAGTGGGTATGGTCCTGGTTCTTATAGGTCACTTGGAGGTTTTGGGGGTAGGCTTGGCGATTATGGTGGATATGGGGGTGGAGACGAGTTTGGTGGTAGTTTTGGGGGTTATGGTGGCGGTGCTGCTGCTGGCTATGCTGGTTTTCGAGGAGAATCTTCGTTTGGCTACTCTAGTCGCTACGGATCCTACATGGGGGGCCTTGGTGCTGGATATGGTGGCGGTGGGTTAGGCGCATATGGACGAGGTGGTGGGGGTTATGGAAGCTATGGTGGTCCAGGTGCTGGTGGGGGTTATGAATCAGGCTCTGGTGCTGGTTATGGCGGAGCTGGAGGTGGAGTGTATCCTAGTAGAGGAAGCTATGGTGGCACTAGTCGTTACCATCCTTATGCAAGATAG 1146 0.4703 MASRKSDNPHSGDGASPGKIFIGGLAKDTTLGHKQHNITFFSFLIKFYNYLFIGLDFGCTETFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNPASLPPFASDSRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSLGGFGGRLGDYGGYGGGDEFGGSFGGYGGGAAAGYAGFRGESSFGYSSRYGSYMGGLGAGYGGGGLGAYGRGGGGYGSYGGPGAGGGYESGSGAGYGGAGGGVYPSRGSYGGTSRYHPYAR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1914 381 Gene3D - 18 125 IPR012677 -
Ssu9g1914 381 PANTHER OS08G0320100 PROTEIN 59 381 - -
Ssu9g1914 381 PANTHER OS08G0320100 PROTEIN 1 33 - -
Ssu9g1914 381 Gene3D - 126 247 IPR012677 -
Ssu9g1914 381 SMART rrm1_1 50 119 IPR000504 GO:0003723
Ssu9g1914 381 SMART rrm1_1 136 209 IPR000504 GO:0003723
Ssu9g1914 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 197 IPR000504 GO:0003723
Ssu9g1914 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 115 IPR000504 GO:0003723
Ssu9g1914 381 SUPERFAMILY RNA-binding domain, RBD 20 127 IPR035979 GO:0003676
Ssu9g1914 381 SUPERFAMILY RNA-binding domain, RBD 123 219 IPR035979 GO:0003676
Ssu9g1914 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Ssu9g1914 381 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 59 381 - -
Ssu9g1914 381 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 33 - -
Ssu9g1914 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1914 Ssu-Chr9 56748085 56749765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1914 45 197 Eukaryotic Initiation Factors Gene Family AT2G23350 24.855 1.82e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1914 K12741 - gmx:100801373 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1914 9 56748085 56749765 Ssu6g3666 6 80518373 80520162 PCT