Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1903 ATGGGACCTGGTTTGGATTTATTGTTGCAACATTTGGCTGAGAATGATCCCACTAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCACTGCCTACTGTGACAATCAACGAGAATTTGCAGTGTTCTGTGTGTCTGGATGATTTTGAACTTGGTTCTGAAGCTAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTGCGCTGGCTGGAACTTCATAGTTCTTGTCCAGCTTGCCGGCTTCAGTTGCCAGTCGATGAATCTAAGCAAGCCCCTGATGTGTCGAGGAATAGCAGAAACCGAAGGGAGGAAGAAAATATTGAACATGACAATGCTGAAGAAAGAAATGGTGAAGGGAGAAATGCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGgattattttcttcattgaaCTCTTCATCCTCTCGCAGTTCCATTGCAAACGGAAATGATACTCAATCAGATGAAAACTGA 501 0.4291 MGPGLDLLLQHLAENDPTRYGTPPAQKEAIEALPTVTINENLQCSVCLDDFELGSEAKEMPCKHRFHSGCILRWLELHSSCPACRLQLPVDESKQAPDVSRNSRNRREEENIEHDNAEERNGEGRNASGGRRFSFPWPFNGLFSSLNSSSSRSSIANGNDTQSDEN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1903 166 MobiDBLite consensus disorder prediction 92 130 - -
Ssu9g1903 166 Pfam Ring finger domain 43 85 IPR001841 -
Ssu9g1903 166 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 146 - -
Ssu9g1903 166 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 146 - -
Ssu9g1903 166 Coils Coil 100 120 - -
Ssu9g1903 166 MobiDBLite consensus disorder prediction 97 126 - -
Ssu9g1903 166 ProSiteProfiles Zinc finger RING-type profile. 44 85 IPR001841 -
Ssu9g1903 166 SMART ring_2 44 84 IPR001841 -
Ssu9g1903 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 92 IPR013083 -
Ssu9g1903 166 SUPERFAMILY RING/U-box 33 96 - -
Ssu9g1903 166 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1903 Ssu-Chr9 56554941 56555441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1903 4 91 C3H Transcription Factor Family AT1G26800 47.191 2.55e-24 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1903 K11982 - gmx:100784876 246.514