Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1898 ATGCGCCCCGTCCCAGACAAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGCCATGACTGTAGGCGCGCCCGAGGATCTTCGCAGACCTTTCGGTCAATTTGGTCCTCTCAAGGACATTTACCTGCCTAAGGATTACTACACTGGAGAACCCCGTGGGTTTGGTTTTGTCCAATATGTGGATCCTGCTGATGCTGCCGATGCAAAATATCATATGGACGGTCAAATTCTGCTTGGTCGGGAGCTCACTGTTGTCTTTGCAGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGTCAAGAGAAAAAAGGGGTCGATTTTATGATCGAAGGAGGTCTCCTCCTCGCTACTCTCGATCTCCACCACCACGCCATAGATCTCGTTCTCGCAGTCGTGATTATTATTCCCCTCTTCCTAAACGAAGGGAATATTCAAGATCTGTCTCCCCTGAGGATAGGAGGTACAGTCGTGAAAGATCATATTCGCAGCACAGTAGAGAGAGGTCATACTCACGCTCTCCACCTTATAATGGGGGCTCAAGGAGCCGTAGTCAGAGTCCAGCAAAGGGCCCAGGCCGGAGCAGAAGTCCAAGTCCGAACCGTGATGTAAGGGAACCAGCCCGTGGTAGGTCCCCCAGTCAGTGA 645 0.5116 MRPVPDKISLPAFLFVTFAMTVGAPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSREKRGRFYDRRRSPPRYSRSPPPRHRSRSRSRDYYSPLPKRREYSRSVSPEDRRYSRERSYSQHSRERSYSRSPPYNGGSRSRSQSPAKGPGRSRSPSPNRDVREPARGRSPSQ 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1898 214 SUPERFAMILY RNA-binding domain, RBD 26 117 IPR035979 GO:0003676
Ssu9g1898 214 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 24 198 - -
Ssu9g1898 214 SMART rrm1_1 13 86 IPR000504 GO:0003723
Ssu9g1898 214 MobiDBLite consensus disorder prediction 92 214 - -
Ssu9g1898 214 MobiDBLite consensus disorder prediction 127 166 - -
Ssu9g1898 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Ssu9g1898 214 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 24 198 - -
Ssu9g1898 214 Gene3D - 16 133 IPR012677 -
Ssu9g1898 214 MobiDBLite consensus disorder prediction 167 193 - -
Ssu9g1898 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 83 IPR000504 GO:0003723
Ssu9g1898 214 MobiDBLite consensus disorder prediction 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1898 Ssu-Chr9 56502545 56505152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1898 16 121 Eukaryotic Initiation Factors Gene Family AT2G36660 32.075 1.75e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1898 K12900 - gmx:100775883 293.893