Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1895 ATgggagaaatacaaagaaaggcAATGTCAAGGTgggagaaggaggaagaagaagaagaagcacaaGCCCAAATGGATATCTGGAAGTACATATTTGGGTTTGTGGAAATGGCAGTGGTGAAATGTGCAATAGAGCTTGGCATAGCTGAAGCCATAGAAAAGCATGGAAGTCCCATGACCCTATCGGAGATATCATCAACTCTAGCTTGTGATCCTTCACTTCTTAACCGCATCATGAGGTTCCTAGTACACCGAAAGATATTCAAAGCCACACCCACCAGCCATGGGTGCAGTGGCTATTCTCAAACACCTTTGTCTCGCCGTCTGATGAGAAACGGCGAACATAGCATGGCTGCTTTGCTTTTGCTGGAGAGTAGTCCTGTCATGCTGGCACCTTGGCATGGTCTAAGTGCTCGCATCTTGGCCAATGGCAATCCCTCCTTTGAAAAGGCTCACGGTGAAGACGTGTGGCGCTATGCTGCGGCAAACCTCGATCACAGCAACCTCATCAATGAAGCAATGGCATGTGATGCTAAGCTTGTTATGCCTGTGATCATTGAAAGTTGCAGCGAGACATTTGATGGTCTCAAGTCCTTGGTGGATGTGGGTGGGGGCAATGGCACCACCATGAGCATCCTGGTTAAGGCTTGTCCTTGGATTCGAGGCATCAATTTTGATCTTCCTCATGTCATTGCTGAGTCCCATCAGTGTGATGGTGTGGAACATGCGGCAGGTGACATGTTTCTAAATGTTCCTAAAGCTGATGCTGCTTTTCTTATGtgGGTTTTGCACGACTGGTCAGACGAAGAGTGCATCCAAATCTTAAAGAAGTGTAGGGAAGCCATCccaaaagaaaatggaaggGTTATTATTGTGGAGGCAGTGATTGAAGAAGAAGGGAAGCATAACGGGTTGAAGGATGTAGGATTGATGCTGGACATGGTGATGATGGCGCACACTAACTTCGGCAAAGAGCGCACACTCAAAGAATGGGAATATGTCATCAAAATGGCAGGATTTAGCGCATACACTGTGAAAGCCATTCATGCTGTGCAGTCCGTGATTTTGGCTTTCTACtga 1080 0.438 MGEIQRKAMSRWEKEEEEEEAQAQMDIWKYIFGFVEMAVVKCAIELGIAEAIEKHGSPMTLSEISSTLACDPSLLNRIMRFLVHRKIFKATPTSHGCSGYSQTPLSRRLMRNGEHSMAALLLLESSPVMLAPWHGLSARILANGNPSFEKAHGEDVWRYAAANLDHSNLINEAMACDAKLVMPVIIESCSETFDGLKSLVDVGGGNGTTMSILVKACPWIRGINFDLPHVIAESHQCDGVEHAAGDMFLNVPKADAAFLMWVLHDWSDEECIQILKKCREAIPKENGRVIIVEAVIEEEGKHNGLKDVGLMLDMVMMAHTNFGKERTLKEWEYVIKMAGFSAYTVKAIHAVQSVILAFY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1895 359 PIRSF O-mtase 4 359 IPR016461 GO:0008168
Ssu9g1895 359 CDD AdoMet_MTases 199 292 - -
Ssu9g1895 359 Pfam Dimerisation domain 39 83 IPR012967 GO:0046983
Ssu9g1895 359 Gene3D Vaccinia Virus protein VP39 111 358 IPR029063 -
Ssu9g1895 359 Gene3D - 9 109 IPR036388 -
Ssu9g1895 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 355 IPR029063 -
Ssu9g1895 359 Pfam O-methyltransferase domain 133 341 IPR001077 GO:0008171
Ssu9g1895 359 PANTHER O-METHYLTRANSFERASE 13 358 IPR016461 GO:0008168
Ssu9g1895 359 SUPERFAMILY "Winged helix" DNA-binding domain 17 113 IPR036390 -
Ssu9g1895 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 359 IPR016461 GO:0008168
Ssu9g1895 359 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 13 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1895 Ssu-Chr9 56487580 56488809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1895 40 345 Monolignol Biosynthesis Gene Families AT5G54160 38.095 5.80e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1895 K22588 - gmx:100782951 577.4