Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1891 ATGCGAACTTCATGGGCTGATTTGGCTGCGTCTGAAAATGCGGGAACATCTAACTCCACAGCCCCGTCGCGGCCCGTTTATGTGCCTCCGCATCTGAGGAACCGTGCAGCATCAGCATCAGCATCAGCAGAATCCCCTGCTCCTCTTCCACCCAATGTGAGTGGCAACAGTAATGCGGGACCACGGTGGGGTGCGCCCAGAAACGGGTGGGGGAACAGAGGCGGTGGTTGGGATCGCCGCGAAGTCAACCCCTTCGGAGATCAGGACGATGCGGCAGCGTTTGGGGAGCAGGAAAACACGGGAATTAATTTTGATGCGTATGAAGACATTCCGGTGGAGACGAGCGGCGAGAACGTGCCCCCGCCTGTGAATACTTTTGCGGAGATTGACTTGGGCGACGCGCTTAATCAGAACATTAGACGGTGCAAATATGTGAAGCCAACGCCTGTTCAGCGGCACTCCATACCCATATCCCTTGGGGGTAGGGATTTGATGGCGTGCGCGCAGACTGGTTCCGGAAAGACTGCGGCATTCTGTTTCCCAATTATCAGTGGGATTATGAGGGGCCAACCCCTGCAGAGGCCACCTCGCGGGGTCCGCACAGTCTATCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCCATCCAAATACATGAAGAGGCTAGGAAGTTTTCGTACCAGACAGGGGTTAGGGTGGTTGTTGCTTACGGTGGAGCTCCGATAAACCAGCAGCTACGGGATCTTGAGAGAGGGGTGGATATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAGATATTTGGCCTTAGATGAGGCGGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGTCAGACAGACTATGCTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGACTAGCCACTGATTtcctttcaaattatatttttctggCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGACCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCACGCACAGAGGGCAAATGGTGTCCAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTAGAGCACTGGTTGTGTCGTAATAGTTTTCCAGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCCCTAGCAAGGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGATTGGCTCTCACGGTATGCTGCTCGCTCCTCCTTTGGTGGTGGACGGAACCGTCGATCAGGAGGCCGTTTTGGTAGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTCGGGGTGGTTCTGATTACTACAGTGCAGGAAACAACAGTGGGGGATATGGTGCTTCTAGTGGGTATGCTGGAGGATACGGTCCTGGGGTAACCAGTGCATGGGACTGA 1749 0.4946 MRTSWADLAASENAGTSNSTAPSRPVYVPPHLRNRAASASASAESPAPLPPNVSGNSNAGPRWGAPRNGWGNRGGGWDRREVNPFGDQDDAAAFGEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTPVQRHSIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPLQRPPRGVRTVYPLALVLSPTRELSIQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLATDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLADLMQEANQEVPDWLSRYAARSSFGGGRNRRSGGRFGSRDFRREGSFSRGGSDYYSAGNNSGGYGASSGYAGGYGPGVTSAWD 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1891 582 Gene3D - 343 522 IPR027417 -
Ssu9g1891 582 MobiDBLite consensus disorder prediction 38 61 - -
Ssu9g1891 582 CDD SF2_C_DEAD 352 488 - -
Ssu9g1891 582 Pfam Helicase conserved C-terminal domain 364 479 IPR001650 -
Ssu9g1891 582 MobiDBLite consensus disorder prediction 1 24 - -
Ssu9g1891 582 MobiDBLite consensus disorder prediction 523 543 - -
Ssu9g1891 582 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 553 - -
Ssu9g1891 582 CDD DEADc_DDX3_DDX4 125 346 IPR044763 GO:0003724|GO:0005524
Ssu9g1891 582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 518 IPR001650 -
Ssu9g1891 582 SMART ultradead3 143 355 IPR014001 -
Ssu9g1891 582 MobiDBLite consensus disorder prediction 1 91 - -
Ssu9g1891 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 340 IPR014001 -
Ssu9g1891 582 SMART helicmild6 398 479 IPR001650 -
Ssu9g1891 582 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Ssu9g1891 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 495 IPR027417 -
Ssu9g1891 582 Pfam DEAD/DEAH box helicase 148 329 IPR011545 GO:0003676|GO:0005524
Ssu9g1891 582 Gene3D - 81 342 IPR027417 -
Ssu9g1891 582 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 38 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1891 Ssu-Chr9 56445256 56449984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1891 122 511 Eukaryotic Initiation Factors Gene Family AT3G19760 31.202 4.79e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1891 K11594 - gmx:100784557 929.087