Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1877 ATGCTGCCAAAATGTGAACACGTTTTCCACCGGCATTGCATCGATGCATGGTTACCCTCTCGCATAACCTGTCCCATTTGCCGCAAGAGGCTCACATCCGACACCGTAATCGGCATTGATGATGACCCCACCAATGTTGTCCCAGCGGAAGAGTCAGAGGTGGCAGTAACCGCAGCGGAACAACAACCCGAAACTGAAACCTCTGACAGTAGTGTTGTGGGACAGGCGGTTACTTCTCCTGCACTCGAATCGAGAAGGTTCACTCCAGAAGATGTGAGGAGGGAAATTGTCGCAAATCATGGGAGGATTCGTCTGCCAGGTGCATGGAGTCGGAAGACAGCGTGGAACGCAAGCGACAGTGATCAGAAGCGGTGGTTCTTGTCTCTGTCCGCCAGCAAGTCGTGCTCTTtattcacttaa 420 0.5167 MLPKCEHVFHRHCIDAWLPSRITCPICRKRLTSDTVIGIDDDPTNVVPAEESEVAVTAAEQQPETETSDSSVVGQAVTSPALESRRFTPEDVRREIVANHGRIRLPGAWSRKTAWNASDSDQKRWFLSLSASKSCSLFT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1877 139 PANTHER RING FINGER DOMAIN-CONTAINING 1 86 - -
Ssu9g1877 139 Pfam RING-H2 zinc finger domain 4 28 IPR024766 GO:0008270
Ssu9g1877 139 MobiDBLite consensus disorder prediction 58 82 - -
Ssu9g1877 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 99 IPR013083 -
Ssu9g1877 139 SUPERFAMILY RING/U-box 2 34 - -
Ssu9g1877 139 MobiDBLite consensus disorder prediction 52 86 - -
Ssu9g1877 139 PANTHER FINGER PROTEIN ATL5H, PUTATIVE-RELATED 1 86 - -
Ssu9g1877 139 ProSiteProfiles Zinc finger RING-type profile. 5 28 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1877 Ssu-Chr9 56257435 56258036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1877 1 99 Rapid Response to Elicitors AT3G05200 35.938 7.91e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1877 K10664 - gmx:100804862 93.5893