Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1875 ATGGCATTGTGTAATAAGCTTGGAAATGTCTTGAGGCAGGGTGCTGCTCACAGCAGACAATCACCTGTTGCGTCCATGCTTAATTATATTCGCTGCATGTCTTCAAACAAGCTGTTCGTCGGAGGCCTTTCATATGGAGTTGATGACCAATCTCTTAAAGACGCATTTGCTGGCTTTGGAGATGTGGTTGAGGCAAGAGTTATAACTGATAGAGACACTGGAAGATCAAGGGGGTTTGGATTTGTCAACTTCTCCAATGATGAGTCTGCAAGTTCAGCACTCTCTGCAATGGATGGGCAGGATCTAAATGGGCGAAACATTCGGGTATCCTATGCAAATGATAGACCCTCTGGACCTCGatctggtggtggtggtggttatgGCGGGGGTTATGGTGGTGGTTTTACTTCTCGTGATGGTGAGTTCAAAGAACTAATGGCTTTGTGCAGCAGTCGTTGA 459 0.4379 MALCNKLGNVLRQGAAHSRQSPVASMLNYIRCMSSNKLFVGGLSYGVDDQSLKDAFAGFGDVVEARVITDRDTGRSRGFGFVNFSNDESASSALSAMDGQDLNGRNIRVSYANDRPSGPRSGGGGGYGGGYGGGFTSRDGEFKELMALCSSR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1875 152 Gene3D - 18 145 IPR012677 -
Ssu9g1875 152 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 134 - -
Ssu9g1875 152 SUPERFAMILY RNA-binding domain, RBD 33 139 IPR035979 GO:0003676
Ssu9g1875 152 SMART rrm1_1 37 110 IPR000504 GO:0003723
Ssu9g1875 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Ssu9g1875 152 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 134 - -
Ssu9g1875 152 MobiDBLite consensus disorder prediction 110 130 - -
Ssu9g1875 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1875 Ssu-Chr9 56230840 56232956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1875 38 124 Eukaryotic Initiation Factors Gene Family AT4G34110 44.828 3.86e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1875 - - gmx:100499841 209.92