Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1868 ATGGAGGGATCAGGGTCAGCGACGGGTTCAGGTCCGGCACCGTTCCTCCTGAAGACGTACGAGATGGTGGATGATTCATCAACGGCGGAGATTGTATCATGGAGCTCCACCAACAACAGCTTCATCGTCTGGAACCCCGCTGATTTCTCTCGTCTTCTTCTTCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGGATTTCGAAAAGTACACCCAGAGCGATGGGAGTTTGCTAATGAAGATTTTTTGAAAGATCAAAAGCATCTTCTGAAGAATATTCAGCGCAGGAAACCTGTCCACAGTCACACTCATCCTGTTGCGGATCCAGAAAGGTCAGCATTTGAGGAAGAAATAGAGAAACTTTCGCACGACAAAACCACCATTCAATCCAACATTTTTCGCTTCAAACAGCACCACTCCGCTGCAAAGACTCACCTGGAAGATCTACGGCAGCGATTGGATGGCATGGAGGAGAGGCAGAAGAATTTGCTCAGCTTCTTTGAAAAGGCTCTTCACAATCCTACTCTTGTTCAACAAATTTCTCGCAGAATTGAGTCCATGGATTTGTTGGCATATAACAAGAAAAGGCGATTGCCTCAGGTTGATGACCATGACCATCACTTGCAGACTGTTGCTGAAAACAGCCTTGTTGACAGTTTTGGAATGGAATTTGGAAATATTTCTCATCAAGACTTCTCCAATAAACTCACACTGGAATTGACACCAGCTGTTTCGGATATGAACTTGGTGGTGTCATGTAGTACACAGAGTTCAAATGAAGATGGAGAAAGCCCACAGACGATGCTACCTGCTGAGACAGCAGAGCTTGCGCAAACTGGAGCATCTTTTACTTTTCAGATGGATTCATGTTTATCACGAACAGGGACAGCTTCTGAGTGCCCCAAATTGGACTCATTGGAACCAAATTGTGAAGATAGTGACAGTTATATATCCTGCCTTTTAAATCTATCTCTGGCATCTTGTCCATTACAAGTCAAGAGAAATTCGTGCACCGATAGATCACCACCCCAACTAGACTGTCAAGAAATTGGAAAATTGGCAGAATCAAATTTTTGtgctaatgataataataaagaatctGATGCTGGAGCTTCTTCAAGCAGACATCTAAACGAGGTTACTAATTTAGCTTCCTCACACGAGGCTCCCCCAACTGCTCCAGCTAGAGTAAATGATGTGTTTTGGGAACAGTTCCTTACAGAAAGACCAGGCTGTTCAGACAATGAAGACTCAATGTCCACCTACAAAGCAAATGCATATGCTGAGCAAGATGAAGAAGGGCGCTCAGTTCATGGAATTTCTGGAAATGTTATGGATATGGATCAGCTGACACTCTGA 1383 0.4346 MEGSGSATGSGPAPFLLKTYEMVDDSSTAEIVSWSSTNNSFIVWNPADFSRLLLPTYFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFLKDQKHLLKNIQRRKPVHSHTHPVADPERSAFEEEIEKLSHDKTTIQSNIFRFKQHHSAAKTHLEDLRQRLDGMEERQKNLLSFFEKALHNPTLVQQISRRIESMDLLAYNKKRRLPQVDDHDHHLQTVAENSLVDSFGMEFGNISHQDFSNKLTLELTPAVSDMNLVVSCSTQSSNEDGESPQTMLPAETAELAQTGASFTFQMDSCLSRTGTASECPKLDSLEPNCEDSDSYISCLLNLSLASCPLQVKRNSCTDRSPPQLDCQEIGKLAESNFCANDNNKESDAGASSSRHLNEVTNLASSHEAPPTAPARVNDVFWEQFLTERPGCSDNEDSMSTYKANAYAEQDEEGRSVHGISGNVMDMDQLTL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1868 460 Coils Coil 147 174 - -
Ssu9g1868 460 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu9g1868 460 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu9g1868 460 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Ssu9g1868 460 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu9g1868 460 Gene3D - 9 105 IPR036388 -
Ssu9g1868 460 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu9g1868 460 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu9g1868 460 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu9g1868 460 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 8 450 - -
Ssu9g1868 460 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 450 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1868 Ssu-Chr9 56149367 56151051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1868 15 460 HSF AT4G13980 50.107 2.81e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu9g1868 HSF_DNA-bind 3.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1868 K09419 - gmx:100816484 622.468