Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1859 ATGATCCCGCTTCTGACAACTCGTCTCTGTTCTTCGCTTCTGCCACGGCAACCCACCGCGACTCAAGCCGCAGAACCTCCTCTTGACGACGACTTCAAGGTCTCCAACTTGAGCTTCTTTGCACTGCCGGAGCAGCTCAAGAACAATCTCCTTCACACCACGTGCGGCACGCCGTCGTACAGTGCACGTGAGATCCTTGGCAACCTCCATGGCCGTGGAAGCCCTGAGCCCAACGCCGACGGGGTGGTCGGGCAGCAGCCTCTGCAATTGGATGGGCGTGAGGTGCAGGGAGATCAACGGCTCATTGAGAGTAGACTTAATCGACCTGGCTTCCCAGTCACTGAGCGGAACCCTCCCTCCGAATCTGAACTCCCTCTCCCAACTCACCTGCCCTCTATCTCCAGAACAACGCTCTCTCCGGTGCGCTTACCCTCCTTGGCCAACCTCTCCATGCTCGAAACCGTGTTCCTCGACGCCAACAACTTCACCTCCGTCCCCGCCGGTTGCTTCCTGGGGCTCACTAGTTTAAAAACCCTCAGCATGACCGACAATATCAACCTAGCTCCCTGGACGATTCCCACCGAGTTGACTCAGTCCCCCTACCTCGTCGAACTCGACCTCGGAAACGCAAACCTCGTGGGTACTTTGCCGGATGTATTCGACTCCTTCGTGAGTTTGCAGGAGCTTCGTCTCTCTTACAACAACCTCACTGGGGGCTTGCCCAAGTCCTTTGCGGGATCTGAAATTCGGCATTTATGGCTCAACACTCAGAAGGATGGGTTTGGGTTTTCGGGTTCCATCGAGGTGCTTTCTTCGATGACCCACTTGTCTCAGCTTCATGACAACATTTTAACTGGGGTGGTTCCACCTTCTTTGATGTCCCTGCCTAGCCTGAAGAACGTTTCTTTGGATTACAACTGGCTTCAGGGTCCTGTTCCTTCCTTTGGGAAAGGTGTGAAGGTCACTCTCGATGGTAATAACTTTTGTCAGAAACCCTGTGATTCTCAGATCACCACTTTGCTTGATATTGCTGCAGATTTTGGGTATCCCCATTACTGGACAGGCAACGATCCTTGTCAAGATTGGCGTTACATTGTGTGCTCAGACGGGAAGGTTATTACGGTGAATTTGGCGAAGCGGAATTTGACGGGAACCATTTCACCTGCATTTGCCAACTTAACTGATTTGAGGAACTTGTatcttaatgataataatttgattGGTTTAATACCAGGGAGCTTGACAAATTTGTCTCAGCTTTGGGTTCTGGATGTCTCGAATAACAACCTATCTGGTGAAATTCCCAAGTTCTCAACCAAGGTGAAGTTCAGTGCTTCAGGTAACGTTTGGCTTGAGCGTTCTGCAAGTGGCCGCGGCAGTGGAACTACTCCATCAACGGCAGTGAAACCACCCAGTGGAAGTCTAAACGTAACGTCAAGTGGTTCTTCACTGTCACCTGCTTGGATCGCAGGTGTAGCCATTGTTGCTGTATTTTTCATTGCAATGGTGCTGTATGTCTTTCGCATGTGCCATGTAAAAAACTGGCGGTGCAAATTCGGAAGGGTTGATAATCTAGAAAACGGAAAAGAAGGTGTTCCAAGTTTTGAGGTTGCAAGTGTAACCATGTCAATCCAAGTTCTTCGGCAAGTAACGAATAATTTCAGTGAAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTTCATGATGGAAGTAAAATTGCTGTGAAGAGGATGCAATCTGGTGCTACGGGGAGTCAAGGAATGAATGAGTTCCAAGCAGAGATTGCATGTCTCAGTAAAGTCAGGCACAGGCATTTGGTGGGTCTTTTAGGACATTGCATTAACGTCAGCGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACACAACATCTGTTTTATTGGCGTGAAAATGGCCGTGCTCCTTTGACTTGGAAACAAAGGACAGCAATAGCTTTGGATGTAGCACGTGGAGTGGAATACTTGCACAGCCTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCAAACATATTATTGGGTGATGACATGAGAGCCAAGGTTGCAGATTTTGGTTTGGTTAAAAATATTGCGCCAGATGGGAAGGATTCTGTCGAGACACGAGTGGCTGGAACATTTGGATATCTGGCACCTGAATATGCCGCTACTGGAAGAGTGACGACCAAAGTAGATGTGTACGCATTTGGAGTAGTTTTGATGGAACTGATTACCGGTAAAAAGGCATTAGACAATACTGTGCCTGATGAAATGTGTCATTTAGTTTCATGGTTCCGTAGGATACTAATTGACATGGAAAATATCTCAATGGCAACTGATCAAACTCTCAACCCCGACGAGGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCCTGAACCACACCAAAGGCCGAATATGGGGCGTGTAGTGAATGTCTTGGTTCCTCTGGTAGTAGAGCAATGGAAGCCTACTACCAgccatgaagaagaagaaggttaTGACATGATCTATGAAGGCACTTATGACATGTCCTTCTCGGAAATTCTATCAGGCCGTTGA 2613 0.4749 MIPLLTTRLCSSLLPRQPTATQAAEPPLDDDFKVSNLSFFALPEQLKNNLLHTTCGTPSYSAREILGNLHGRGSPEPNADGVVGQQPLQLDGREVQGDQRLIESRLNRPGFPVTERNPPSESELPLPTHLPSISRTTLSPVRLPSLANLSMLETVFLDANNFTSVPAGCFLGLTSLKTLSMTDNINLAPWTIPTELTQSPYLVELDLGNANLVGTLPDVFDSFVSLQELRLSYNNLTGGLPKSFAGSEIRHLWLNTQKDGFGFSGSIEVLSSMTHLSQLHDNILTGVVPPSLMSLPSLKNVSLDYNWLQGPVPSFGKGVKVTLDGNNFCQKPCDSQITTLLDIAADFGYPHYWTGNDPCQDWRYIVCSDGKVITVNLAKRNLTGTISPAFANLTDLRNLYLNDNNLIGLIPGSLTNLSQLWVLDVSNNNLSGEIPKFSTKVKFSASGNVWLERSASGRGSGTTPSTAVKPPSGSLNVTSSGSSLSPAWIAGVAIVAVFFIAMVLYVFRMCHVKNWRCKFGRVDNLENGKEGVPSFEVASVTMSIQVLRQVTNNFSEDNILGRGGFGVVYKGEFHDGSKIAVKRMQSGATGSQGMNEFQAEIACLSKVRHRHLVGLLGHCINVSERLLVYEYMPQGTLTQHLFYWRENGRAPLTWKQRTAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNIAPDGKDSVETRVAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGKKALDNTVPDEMCHLVSWFRRILIDMENISMATDQTLNPDEETMESIYKVAELAGHCTAPEPHQRPNMGRVVNVLVPLVVEQWKPTTSHEEEEGYDMIYEGTYDMSFSEILSGR 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1859 870 Gene3D Phosphorylase Kinase; domain 1 521 631 - -
Ssu9g1859 870 Gene3D Transferase(Phosphotransferase) domain 1 632 856 - -
Ssu9g1859 870 PANTHER OSJNBA0070M12.3 PROTEIN 142 853 - -
Ssu9g1859 870 Pfam Leucine Rich Repeat 225 245 IPR001611 GO:0005515
Ssu9g1859 870 ProSiteProfiles Protein kinase domain profile. 554 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1859 870 Pfam Leucine rich repeat 375 430 IPR001611 GO:0005515
Ssu9g1859 870 MobiDBLite consensus disorder prediction 109 131 - -
Ssu9g1859 870 SMART LRR_typ_2 149 172 IPR003591 -
Ssu9g1859 870 SMART LRR_typ_2 393 416 IPR003591 -
Ssu9g1859 870 SMART LRR_typ_2 417 441 IPR003591 -
Ssu9g1859 870 SMART LRR_typ_2 223 246 IPR003591 -
Ssu9g1859 870 MobiDBLite consensus disorder prediction 454 475 - -
Ssu9g1859 870 ProSitePatterns Protein kinases ATP-binding region signature. 560 582 IPR017441 GO:0005524
Ssu9g1859 870 PANTHER RECEPTOR-LIKE KINASE TMK4 142 853 - -
Ssu9g1859 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Ssu9g1859 870 SUPERFAMILY Protein kinase-like (PK-like) 531 836 IPR011009 -
Ssu9g1859 870 Gene3D Ribonuclease Inhibitor 73 337 IPR032675 -
Ssu9g1859 870 SMART serkin_6 554 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1859 870 Pfam Protein tyrosine and serine/threonine kinase 557 830 IPR001245 GO:0004672|GO:0006468
Ssu9g1859 870 SUPERFAMILY L domain-like 127 437 - -
Ssu9g1859 870 Gene3D Ribonuclease Inhibitor 338 454 IPR032675 -
Ssu9g1859 870 CDD STKc_IRAK 560 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1859 Ssu-Chr9 55982813 55988187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1859 146 831 Receptor kinase-like Gene Family AT5G07280 32.889 6.91e-80 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu9g1859 PK_Tyr_Ser-Thr 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1859 - - ccaj:109809286 1068.91