Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1858 ATGGCTGACCTGAAATTAAAATCGAAAACTCTAGTTTCTGTCTCGAAAGTCTTGCTGTGTTTCAGTTTCCTGTGCACCGCCATTGGCGACGACGGCGCGTTGATGTCGAAGCTGGCGAAGGCGCTGAGCCCAGCGCCGTCGGGGTGGTCGGGGAGCAGCTTCTGCGACTGGACGGGCGTGAAGTGCAGCACGAACAGCGTGACCTCAATCAACCTCGCTTCGCAGAAACTCAGTGGAACGCTCCCTCCGGATCTGAACTCGCTCTCCCAACTCACCACCCTCTCTCTCCAGAACAACGCGCTCTCCGGCGCGTTGCCTTCCTTCGCCAACCTCTCCATGCTCCAGAAAGTGTTCCTGGACGGCAACAACTTCGCATCCGTCCCGGACGGTTGCTTCCAGGGGCTCACTAGCTTACAAACCCTCAGCATGACCAACAACATCAACCTCGCTCCTTGGACATTTCCCACCGAGTTGACTCAGTCCTCCAACCTCGTCCAACTCGACCTCGGAAACACAAGCCTCGTGGGTTCTTTACCGGACGTATTCGCCTCCTTCGTGAGTTTGCAGGAACTTCGTCTCTCTTACAACAACCTCACCGGGGGTTTACCCAAGTCCTTTGCCGGATCCGCGATTCAGAATCTGTGGCTCCACAATCAGAAGGACGGGTTCGGGTTTTCGGGTTCCATCGAGGTGCTTTCTTTGATGACCCACTTGTCTCAGGTGTGGCTTCAGAAGAACCTGTTCACGGGTCCCATTCCCGATTTGTCAAATTGCACCACTTTGTTTGATCTGCAGCTTCGGGACAACCAGTTAACCGGTGTGGTTCCGCCTTCTCTGATGTCCCTGGCTAGTCTTCAGAACGTTTCTTTGGATAACAACCTGCTTCAGGGTCCTTTTCCTTCGTTTGGGAAAGGTGTGAAAGTCACTCTCGATGGGACCAATAGTTTTTGTCTGAAAAATGCTGGACCCTGCGATTCTCGTGTCACCACTTTGCTTGATATTGCTGCTGGTTTCGGGTATCCCCCTTCAGTTGGCGCGTTCCTGGACCGGGAACGAGTCTTTTTGGTTGGTTCAATACCAGGGAGCTTGACAAATTTGGCTCAGCTTGAGGTTCTGGATGTGTCTAATAATAACTTATCTGGTGATATTCCAAAGTTCTCAAGCAAGGTGAAGTTCAGTGCTTCAGGTAATGATTTGCTTGGGCGTTctggaggtggtggtggcagcggaACTACGCCGTCAAAGGGTTCTGGTGATGCACCAAGTGGAAGTCCAAACGCGGGGTCAAGCGGTTCTTCACTTTCACCTGCTTGGATCTCAGGTATTGTCGTTATTGCTGTGTTTTTCGTTGCAGTGGTGGTGTTTGTCTTTTGCAAGTGTCATGCTAAACGCCAGGGTGGGAAATTCGGAAGGGTTAATAATCTAGAAAACGGAAAAGGAGGTGTTTCGAGATTTGAGATGTCAATCCAAGTTCTTCGGCAAGTAACTAATAATTTCAGTGAAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGAGAATTGCATGATGGAACTAAAATTGCTGTGAAGAGGATGCAATCTGGTGCAATGGGTAGTAAGGGAATGAATGAGTTCCAAGCGGAGATTGCATTTCTCAGTAAAGTCAGACACAGGCATTTGGTGGCTCTTTTAGGATATTGCATTAACGACAACGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACACAACATTTGTTCTATTGGAGTGAAAATGGCTGTGCTCCATTGACTTGGAAACAAAGGGTGGGAATAGCTTTGGATGTAGCACGAGGAGTAGAATACTTGCACAGCCTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCAAACATATTATTGGGTGATGACATGAGAGCAAAAGTTGCAGATTTTGGTTTGGTTAAAAATGCGCCAGATGATGGGAAGGATTCTGTCTGGACACGAGTGGCTGGAACATTTGGATATATGGCACCTGATTATGCGGCTACTGGAAGAGTGACAACAAAAGTAGATGTGTACGCATTTGGAATAGTTTTGATGGAACTGATTACCGGTAAAAAGGCATTGGACAAGACTGTGCCTGAAGAAATGTCTCACTTGGTTTCATGGTTCCGTAGGATACTAATTAACATGGAAAATATCCCAATGGTAACTGATCAAACTCTCAACCTCGACGAGGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCCTGAATCACACCAAAGGCCAGATATGGGGCACGCAGTGAATGTCTTGGTTCCTCTGGTAGAACAATGGAAGCCTACCTGCAgccatgaagaagaagaaggttaTGACATGATCAATGAAGACACTAATGACATGTCCTTCTCGGAAATTCTATCAGGCCGTTGA 2445 0.4703 MADLKLKSKTLVSVSKVLLCFSFLCTAIGDDGALMSKLAKALSPAPSGWSGSSFCDWTGVKCSTNSVTSINLASQKLSGTLPPDLNSLSQLTTLSLQNNALSGALPSFANLSMLQKVFLDGNNFASVPDGCFQGLTSLQTLSMTNNINLAPWTFPTELTQSSNLVQLDLGNTSLVGSLPDVFASFVSLQELRLSYNNLTGGLPKSFAGSAIQNLWLHNQKDGFGFSGSIEVLSLMTHLSQVWLQKNLFTGPIPDLSNCTTLFDLQLRDNQLTGVVPPSLMSLASLQNVSLDNNLLQGPFPSFGKGVKVTLDGTNSFCLKNAGPCDSRVTTLLDIAAGFGYPPSVGAFLDRERVFLVGSIPGSLTNLAQLEVLDVSNNNLSGDIPKFSSKVKFSASGNDLLGRSGGGGGSGTTPSKGSGDAPSGSPNAGSSGSSLSPAWISGIVVIAVFFVAVVVFVFCKCHAKRQGGKFGRVNNLENGKGGVSRFEMSIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMQSGAMGSKGMNEFQAEIAFLSKVRHRHLVALLGYCINDNERLLVYEYMPQGTLTQHLFYWSENGCAPLTWKQRVGIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDDGKDSVWTRVAGTFGYMAPDYAATGRVTTKVDVYAFGIVLMELITGKKALDKTVPEEMSHLVSWFRRILINMENIPMVTDQTLNLDEETMESIYKVAELAGHCTAPESHQRPDMGHAVNVLVPLVEQWKPTCSHEEEEGYDMINEDTNDMSFSEILSGR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1858 814 PANTHER RECEPTOR-LIKE KINASE TMK4 355 811 - -
Ssu9g1858 814 Gene3D Ribonuclease Inhibitor 346 403 IPR032675 -
Ssu9g1858 814 PANTHER RECEPTOR-LIKE KINASE TMK4 17 343 - -
Ssu9g1858 814 Gene3D Ribonuclease Inhibitor 30 323 IPR032675 -
Ssu9g1858 814 PANTHER OSJNBA0070M12.3 PROTEIN 355 811 - -
Ssu9g1858 814 SMART serkin_6 499 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1858 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Ssu9g1858 814 Pfam Leucine rich repeat N-terminal domain 35 63 IPR013210 -
Ssu9g1858 814 Gene3D Phosphorylase Kinase; domain 1 468 576 - -
Ssu9g1858 814 ProSiteProfiles Protein kinase domain profile. 499 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1858 814 PANTHER OSJNBA0070M12.3 PROTEIN 17 343 - -
Ssu9g1858 814 SMART LRR_typ_2 366 390 IPR003591 -
Ssu9g1858 814 SMART LRR_typ_2 185 208 IPR003591 -
Ssu9g1858 814 SMART LRR_typ_2 88 110 IPR003591 -
Ssu9g1858 814 SMART LRR_typ_2 111 134 IPR003591 -
Ssu9g1858 814 Gene3D Transferase(Phosphotransferase) domain 1 577 805 - -
Ssu9g1858 814 SUPERFAMILY L domain-like 52 303 - -
Ssu9g1858 814 SUPERFAMILY Protein kinase-like (PK-like) 488 790 IPR011009 -
Ssu9g1858 814 CDD STKc_IRAK 505 779 - -
Ssu9g1858 814 MobiDBLite consensus disorder prediction 401 430 - -
Ssu9g1858 814 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515
Ssu9g1858 814 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Ssu9g1858 814 Pfam Protein kinase domain 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1858 814 SUPERFAMILY L domain-like 355 386 - -
Ssu9g1858 814 MobiDBLite consensus disorder prediction 407 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1858 Ssu-Chr9 55948876 55953033 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1858 65 779 Receptor kinase-like Gene Family AT5G65700 32.429 1.95e-87 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu9g1858 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1858 - - ccaj:109809286 1191.41