Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1856 ATGGCTGGCCCCAAATTAAAACCGAAAACCCTACTTTCTCAGCTCTTTCTGTTTCTGTGTCTCGCGTGTACCGCCATTGGTGACGACGGCGCGTTGATGTCGAAGCTGGCGAAGGCGCTGAGCCCAGCGCCGTCGGGGTGGTCGGGGAGCAGCTTCTGCGACTGGACGGGCGTGAAGTGCAGCACGAACAGCGTGACCTCAATCAACCTCGCTTCGCAGAAACTCAGCGGAACGCTCCCTCCGGATCTGAACTCGCTCTCCCAACTCACCACCCTCTCTCTCCAGAACAACGCTCTCTCCGGCGCGTTGCCTTCCTTCGCCAACCTCTCCATGCTCCAAAAAGTGTTCCTGGACGGCAACAACTTCGCATCCGTCCCGGACGGTTGCTTCCAGGGGCTCACTAGCTTACAAACCCTCAGCATGACCAACAACATCAACCTCGCTCCTTGGACATTTCCCACCGAGTTGACTCAGTCCTCCAACCTCGTCCAACTCGACCTCGGAAACACAAGCCTCGTGGGTTCTTTACCGGACGTATTCGCCTCCTTCGTGAGTTTGCAGGAACTTCGTCTCTCTTACAACAACCTCACCGGGGGTTTACCCAAGTCCTTTGCCGGATCTGCGATTCAGAATCTGTGGCTCAACAATCAGAAGGACGGGTTCGGGTTTTCGGGTTCCATCGAGGTGCTTTCTTTGATGATCCACTTGTCTCAGGTGTGGCTTCAGAAGAACCTGTTCACGGGTCCCATTCCCGATTTGTCAAATTGCACCACTTTGTTTGATCTGCAGCTTCGGGACAACCAGTTAACCGGTGTGGTTCCGCCTTCTCTGATGTCCCTGGCTAGTCTTCAGAACGTTTCTTTGGATAACAACCTGCTTCAGGGTCCTTTTCCTTCGTTTGGGAAAGGTGTGAAAGTCACTCTCGATGGGACCAATAGTTTTTGTCTGAAAAATGCTGGACCCTGCGATTCTCGTGTCACCACTTTGCTTGATATTGCTGCTGGTTTCGGGTATCCCCCTCAGCTGGCGCGTTCCTGGACCGGGAACGAGCCTTGTAATGATTGGAGTTTCATTTTGTGTGCGGAGGGGAAGATTATTACGGTGAATTTAGCGAAGCAGAATTTGACGGGAACGATTTCACCCGCGTTTGCTGATTTAACCGATTTGAGGAGCTTGTATCTTAGTAATAATAGTTTGGTTGGTTCAATACCAGGGAGCTTGACAAATTTGGCTCAGCTTGAGGTTCTGGATGTGTCTAATAATAACTTATCTGGTGATATTCCAAAGTTCTCAAGCAAGGTGAAGTTCAGTGCTTCAGGTAATGATTTGCTTGGGCGttctggtggtggtggtggcagcggaACTACGCCGTCAAAGGGTTCTGGTGATGCACCAAGTGGAAGTCCAAACGCGGGGTCAAGCGGTTCTTCACTTTCACCTGCTTGGATCGCAGGTATTGTCGTTATTGCTGTGTTTTTCGTTGCAGTGGTGGTGTTTGTCTTTTGCAAGTGTCATGCTAAAAACCGGCATGGGAAGTTTGGAAGGGTTAATAATCCAGAAAATGGGAAAGGAGAGGTTAAGATTGATATGGTGAGTGTTTCTAATTCCAATGGATATGGTGGTGTTCCGAGCGAGTTGCAAAGCCAGGGCAGTGAGCATAGTGATCTCCATGTTTTTGACGGTGGGAATGGGAATGCTACTATTTCAATCCAAGTTCTTCGGCAAGTTACGGATAATTTCagtgaaaataacattttgGGTAGGGGAGGGTTTGGGGTTGTTTATAAAGGGGAATTGCATGATGGAACTCAGATTGCTGTGAAGAGGATGGAATCTGTGGCAATGGGGAATAAGGGAATGAATGAGTTCCAAGCAGAGATTGCAGTTCTCAGTAAAGTCAGGCACAGGCATTTGGTGGCTCTTTTAGGGTTTTGCATTAACGGCAATGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACACAACACCTGTTTGATTGGCCTGAAAATGGCTGTGCGCCTTTGACTTGGAAACAAAGGGTAGCGATAGCTTTGGATGTAGCTCGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCAAACATATTATTGGGTGATGACATGAAAGCCAAGGTTGCTGATTTTGGTTTGGTTAAAAATGCGCCAGATGGGAAGTATTCTGTCGAGACACGCTTGGCTGGAACATTTGGATATCTGGCACCTGAATATGCAGGTATATCTGGAAAGCCTTTGAATATAAGcttgtcttctttttttgagtttttttttttaatttccttatttGGTTATAACTAA 2355 0.4684 MAGPKLKPKTLLSQLFLFLCLACTAIGDDGALMSKLAKALSPAPSGWSGSSFCDWTGVKCSTNSVTSINLASQKLSGTLPPDLNSLSQLTTLSLQNNALSGALPSFANLSMLQKVFLDGNNFASVPDGCFQGLTSLQTLSMTNNINLAPWTFPTELTQSSNLVQLDLGNTSLVGSLPDVFASFVSLQELRLSYNNLTGGLPKSFAGSAIQNLWLNNQKDGFGFSGSIEVLSLMIHLSQVWLQKNLFTGPIPDLSNCTTLFDLQLRDNQLTGVVPPSLMSLASLQNVSLDNNLLQGPFPSFGKGVKVTLDGTNSFCLKNAGPCDSRVTTLLDIAAGFGYPPQLARSWTGNEPCNDWSFILCAEGKIITVNLAKQNLTGTISPAFADLTDLRSLYLSNNSLVGSIPGSLTNLAQLEVLDVSNNNLSGDIPKFSSKVKFSASGNDLLGRSGGGGGSGTTPSKGSGDAPSGSPNAGSSGSSLSPAWIAGIVVIAVFFVAVVVFVFCKCHAKNRHGKFGRVNNPENGKGEVKIDMVSVSNSNGYGGVPSELQSQGSEHSDLHVFDGGNGNATISIQVLRQVTDNFSENNILGRGGFGVVYKGELHDGTQIAVKRMESVAMGNKGMNEFQAEIAVLSKVRHRHLVALLGFCINGNERLLVYEYMPQGTLTQHLFDWPENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMKAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAGISGKPLNISLSSFFEFFFLISLFGYN 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1856 784 SUPERFAMILY Protein kinase-like (PK-like) 566 758 IPR011009 -
Ssu9g1856 784 SMART serkin_6 580 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1856 784 MobiDBLite consensus disorder prediction 445 474 - -
Ssu9g1856 784 SUPERFAMILY L domain-like 50 301 - -
Ssu9g1856 784 SMART LRR_typ_2 386 409 IPR003591 -
Ssu9g1856 784 SMART LRR_typ_2 183 206 IPR003591 -
Ssu9g1856 784 SMART LRR_typ_2 109 132 IPR003591 -
Ssu9g1856 784 SMART LRR_typ_2 86 108 IPR003591 -
Ssu9g1856 784 SMART LRR_typ_2 410 434 IPR003591 -
Ssu9g1856 784 ProSitePatterns Protein kinases ATP-binding region signature. 586 608 IPR017441 GO:0005524
Ssu9g1856 784 Gene3D Ribonuclease Inhibitor 28 321 IPR032675 -
Ssu9g1856 784 Pfam Leucine rich repeat 368 423 IPR001611 GO:0005515
Ssu9g1856 784 Gene3D Transferase(Phosphotransferase) domain 1 658 767 - -
Ssu9g1856 784 Pfam Leucine rich repeat N-terminal domain 326 360 IPR013210 -
Ssu9g1856 784 Pfam Leucine rich repeat N-terminal domain 33 61 IPR013210 -
Ssu9g1856 784 Pfam Leucine Rich Repeat 185 205 IPR001611 GO:0005515
Ssu9g1856 784 MobiDBLite consensus disorder prediction 451 474 - -
Ssu9g1856 784 ProSiteProfiles Protein kinase domain profile. 580 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1856 784 PANTHER RECEPTOR-LIKE KINASE TMK4 15 758 - -
Ssu9g1856 784 Pfam Protein kinase domain 581 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g1856 784 Gene3D Phosphorylase Kinase; domain 1 542 657 - -
Ssu9g1856 784 SUPERFAMILY L domain-like 326 432 - -
Ssu9g1856 784 PANTHER OSJNBA0070M12.3 PROTEIN 15 758 - -
Ssu9g1856 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Ssu9g1856 784 Gene3D Ribonuclease Inhibitor 323 447 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1856 Ssu-Chr9 55937636 55939990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1856 65 756 Receptor kinase-like Gene Family AT5G07280 31.190 1.37e-77 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu9g1856 Pkinase 1.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1856 - - gmx:100781851 1225.31