Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1848 ATGGTTTCTTTTACAAGTTATTTGATTTATAGAAGAACACAGAACCCATTGCATATCCTCAAATTTCGTAGCATCTTCTTTTTCTCACTGGAAGCCACAAGCTGGCAAACATATGGTGCCTTGAGATATTGTCATTCTGGGTCAGAAAGGGGTAAAAATCTGAAATTGATACCAAACGAGAAGCCAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAACCAAATCCCACCTTATGAAGTTGCCAATAAGTTAAGAATAGCTGCATCTTCCTTTGGGGTTGTTCGTTATATGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCTCAATGTGTCCgggagaaaaggaaagagagggAACTGTTGTATCGTTTAGAGAATAAGGGTGTCATCAAGCCAAATCAACCTCATCGATGTCGGGTTTGTggtagaaagttttatactaatgAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGCGAGCATGTGAAAAGGATGAACCAGATAGAGTCTGCAAGGGGGAACAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTGTTCTCACTCCCAAATTGGGGTATGGTTTGGCAGATGAGCTCAAACGGGCTGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCACAAGCTGCAGATCGAGCATTGCAAAGCCACATGGTGGATATCATGGATCATAGGCGGGTCGAGTGTGTGGTCCTTGTGTCTGATGATTCTGATTTTGTTGATGTAATAAAGGAAGCAAAGCTACGGTGTCTGAAGACGGTTGTCATCGGGGATATTGATGATGGTATCTTAAAGAGGACTGCTGATACTGCCTTTGCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAGCAGGCTGTTTCTGTTGTGAAAAACTGGAAGGATCATGATATCTTAAAGAGGTTAGAGTGGACATATAACCCAGATGTggataaaaagaaattcaatctGGATGATACCGTTACTGAAGCATCTGAAGATGATAATATTGAAGATACCTGTGATGAAGTTGATGATGACTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGATGATGTCACAAATGGACAGCCAGGCAAATTATCTGATTTATCTGTGAATAGGTGA 1191 0.3997 MVSFTSYLIYRRTQNPLHILKFRSIFFFSLEATSWQTYGALRYCHSGSERGKNLKLIPNEKPNRVGLFWDLDNKPPNQIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPQCVREKRKERELLYRLENKGVIKPNQPHRCRVCGRKFYTNEKLVNHFKQLHEREHVKRMNQIESARGNRRVKLVAKYSMKMEKYKKAASAVLTPKLGYGLADELKRAGFWVQTVLDKPQAADRALQSHMVDIMDHRRVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDIDDGILKRTADTAFAWEEILMGKAKKQAVSVVKNWKDHDILKRLEWTYNPDVDKKKFNLDDTVTEASEDDNIEDTCDEVDDDYKDDRGSWWELDSDDVTNGQPGKLSDLSVNR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1848 396 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 55 381 - -
Ssu9g1848 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Ssu9g1848 396 Pfam NYN domain 213 282 IPR021139 GO:0004540
Ssu9g1848 396 PANTHER - 55 381 - -
Ssu9g1848 396 MobiDBLite consensus disorder prediction 375 396 - -
Ssu9g1848 396 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Ssu9g1848 396 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
Ssu9g1848 396 Gene3D - 57 303 - -
Ssu9g1848 396 CDD PIN_LabA-like 152 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1848 Ssu-Chr9 55832418 55833608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1848 59 380 C2H2 Transcription Factor Family AT4G12240 59.760 3.23e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu9g1848 NYN 7.3e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1848 - - gmx:100785257 689.493