Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1833 atgggaAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCGAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGTTGTACGAGTTTTGCAGCGGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGCAACTATGGAGCGTCTGAGGCCAATGTGTCAACAAAGGAAGCCTTGGAGTTAAGCAGTCAACAAGAATACTTGAAGCTGAAAGCACGTTACGAAGCTCTGCAACGTTCACAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTTGAGTCACTTGAAAGACAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATCTTCAACGTAAGCCCTCCTCAACTACTACTGAAATTTTGAGGTTACTTGCGCTGCTGTTTTTACAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCAGTGCTGAAGATATGGGGTATGGCCGCCATCCAGGGCAACCCCAGGGCGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATGGGCTATCAGCCTGATCCAGTATCAGTGGGGACAGCAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA 738 0.4593 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGSSMLKTLERYQKCNYGASEANVSTKEALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKPSSTTTEILRLLALLFLQLEGYQINPLQLNPSAEDMGYGRHPGQPQGDALFQPLECEPTLQMGYQPDPVSVGTAGPSMNNYMAGWLP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1833 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 232 - -
Ssu9g1833 245 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Ssu9g1833 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Ssu9g1833 245 Coils Coil 126 146 - -
Ssu9g1833 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ssu9g1833 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu9g1833 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu9g1833 245 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Ssu9g1833 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu9g1833 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu9g1833 245 Pfam K-box region 91 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu9g1833 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu9g1833 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu9g1833 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu9g1833 245 ProSiteProfiles K-box domain profile. 89 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1833 Ssu-Chr9 55712779 55719939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1833 1 245 MADS-box Gene Family AT1G24260 73.600 5.90e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu9g1833 K-box 7.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1833 - - gmx:100805078 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2346 5 66153423 66161464 Ssu9g1833 9 55712779 55719939 PCT