Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1830 ATGTCACCTGGTTTGGAGTACAACATCGATGATCTGTTTCAAGAAGCTAAGAAAAGATGGCTCAAGCCTGTGGAAGTGCTTTACATTTTACGGAATCACGACAAGTGCGAGTTCACCCACAAGCCCCTTCATCAGCCAGCTGGTGGTTCCCTGTATCTGTTTAATAAAAGAGTCTTGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAAAGATGGCAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGTTGAAATCTTAAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGGAATATGAGCATATTGTTTTTGTGCATTATAGAGAAACAAGTGAGGGGAAATCCAATTCTGAACCTGTCACACAATTGTCATCTAGTTCCTCTCCTGTGTTTAGTCAGAGTCATAGCTCGTATGCTGCTCACAATCCAGGGACAACATCCATTATTGGTGATTCATGTGAACCTAATCAGAATTTCTCTAGTCCTGGGTCTTTAGAAGTTACGTCTGATGCACAAGCCTTGCGCCAATTGGAAGAACAGCTGAGTTTGAATGAGGACATCTTCAATGAAATTGCACTTGATTTTATCCCAGGTCAAGATCAAACGGTGGTCTATAAGCAAGATAAATCTGCAGCTTTGTCTGGACCAAATGATCAAGGACAACCTTGTGATGTATATAATGGAAGGCAAGATGACAGTGGCACTTATTATCCTGATGGAAATGAAAAAACTATATACTGGACAGAGGCATTTGAAAATGAAGAGTCATTATTTTCTTCAGGAAGGGGAATGATTGCCAACCTGGAAAACAATCACTGGCTACACTCTAACAGTAATAATGTTGACAACTCTGTTTTCCCATTTCCTGAAGACATTGGTGGAGTCAAATTTCATCCATATTCTCTGGTAGAAGCTCCAGCAACTAACTCTGACTACCATGCATCATTTTCTGACCAAATCCAAATTCAAGAACCTCTGGGTGTAGATTCAAGCTCGACTGCTGTGCAGAAACAGAAATTTGCAATTAGGGCAGTCTCCCCAGAATACTGTTATGCCACTGAGACTACAAAGGTGATCATTATTGGTTCATTTCTGTGCCATCGCTCGGATTCTACATGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAGATAATTCAGGATGGCGTAATCTGTTGTGAAGCTCCATCTGATCTTGTTGGAAAGGTTAATTTGTGCATTACTTCAGGAAATAGGGTACCATGCAGTGAAGTGAGAGAGTTTGAATTTCGAAATAAGACTACTAGTTGCACTCGCTGCAATTCATTGGAAACAGAAGGCAGTAGAAGTCCAGAAGAGCTGTTATTACTTGTTCGATTTGCAGAGATGCTCCTTTCTGCTTCAACTACAAAGGATGACAGCATAAAATCTGGAAGTCATCTTTCAACAAAACAGAAAGATGATGATGATTCATGGAGCCATGTTATAGACACTCTTCTAGTTGGCACTGGAACATCATCTGGTACTGTTAACTGGCTTCTTGAAGAGCTGCTGAAGGATAAGTTGCAGCTCTGGCTTTCTGGCCGATTCCATGAGAGAGATGAAGGGACGGGCTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACTGCCCTTCATTGGGCTGCAAGGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTTCAGAAGATCCAACCGGTAAAACTGCTGCAACTATTGCAGCCAGCCATGGCCATAAGGGACTGGCAGGTTATCTTTCAGAAGTAGACCTAACAAGCCATCTGTCATCCCTCACATTGGAAGAGAGTGAGATTTCTAAAGGATCTTTTGAGCTTGAAGCCGAGTTCACTGTCAGTAGTGTCTCTAAGGAAAATCTTGTGGCCAATGAGGATCAGGTTGAACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGAAAGAGAAGCTACTGCTGCTGCTGGTCTAAATGGATATTGTATTGGTGCAGGTAGCATTGATGATAACATTTCAGTGCTTTCTGCCATTTCACAACTTAGTTCTGGGAGCTTGCGTGATTACAATTCAGCTGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGCATTCTTAGCATTTCGCCAGAAAGTAGTTAAGATACAGGCTTGTGTGAGGGGTTACCAGGTTCGGAAGCAATACAAGCTATTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAACGAGTTGGTTTACAAAGTGTCCGACAAGAAATTGAGTCGAATGAAGATGAAAGTGATGATGAAGATTTCCTCAAGGTGTTCCGAAAAGAGAAAGTACATGCAGCAATTGAGAAGGCTTTAAAGCGGGTGCTTTCCATGGTCCAGTCTAACAGTGCTCGTCAGCAATATAGACGCTTGCTTGAGATGTATCGTCAAGCCAAGACTGAACTTAGCAGCAGGAGTGATGAAGCACCGTTATCAACTTCAGATGAGGATTTCAATATGGAAGACGAtgatttgaatcaattttgggAAACGCTCTGGCCTTCCTAG 2808 0.4252 MSPGLEYNIDDLFQEAKKRWLKPVEVLYILRNHDKCEFTHKPLHQPAGGSLYLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLEPEYEHIVFVHYRETSEGKSNSEPVTQLSSSSSPVFSQSHSSYAAHNPGTTSIIGDSCEPNQNFSSPGSLEVTSDAQALRQLEEQLSLNEDIFNEIALDFIPGQDQTVVYKQDKSAALSGPNDQGQPCDVYNGRQDDSGTYYPDGNEKTIYWTEAFENEESLFSSGRGMIANLENNHWLHSNSNNVDNSVFPFPEDIGGVKFHPYSLVEAPATNSDYHASFSDQIQIQEPLGVDSSSTAVQKQKFAIRAVSPEYCYATETTKVIIIGSFLCHRSDSTWACMFGDVEVPAEIIQDGVICCEAPSDLVGKVNLCITSGNRVPCSEVREFEFRNKTTSCTRCNSLETEGSRSPEELLLLVRFAEMLLSASTTKDDSIKSGSHLSTKQKDDDDSWSHVIDTLLVGTGTSSGTVNWLLEELLKDKLQLWLSGRFHERDEGTGCSLSKKEQGIIHMVSGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSSEDPTGKTAATIAASHGHKGLAGYLSEVDLTSHLSSLTLEESEISKGSFELEAEFTVSSVSKENLVANEDQVELKASLDAVRNAAQAAARIQAAFRAHSFRKRKEREATAAAGLNGYCIGAGSIDDNISVLSAISQLSSGSLRDYNSAALSIQKKYRGWKGRKAFLAFRQKVVKIQACVRGYQVRKQYKLLLWAVGILDKVVLRWRRKRVGLQSVRQEIESNEDESDDEDFLKVFRKEKVHAAIEKALKRVLSMVQSNSARQQYRRLLEMYRQAKTELSSRSDEAPLSTSDEDFNMEDDDLNQFWETLWPS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1830 935 Pfam IPT/TIG domain 361 431 IPR002909 -
Ssu9g1830 935 SUPERFAMILY E set domains 361 444 IPR014756 -
Ssu9g1830 935 ProSiteProfiles IQ motif profile. 793 816 IPR000048 GO:0005515
Ssu9g1830 935 Gene3D - 519 655 IPR036770 -
Ssu9g1830 935 ProSiteProfiles IQ motif profile. 708 737 IPR000048 GO:0005515
Ssu9g1830 935 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Ssu9g1830 935 ProSiteProfiles Ankyrin repeat profile. 590 622 IPR002110 GO:0005515
Ssu9g1830 935 ProSiteProfiles Ankyrin repeat region circular profile. 590 616 - -
Ssu9g1830 935 SUPERFAMILY Ankyrin repeat 561 651 IPR036770 -
Ssu9g1830 935 Coils Coil 881 905 - -
Ssu9g1830 935 Pfam Ankyrin repeats (3 copies) 573 650 IPR002110 GO:0005515
Ssu9g1830 935 Gene3D - 769 817 - -
Ssu9g1830 935 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Ssu9g1830 935 MobiDBLite consensus disorder prediction 132 186 - -
Ssu9g1830 935 SMART CG_1_2 12 130 IPR005559 GO:0003677
Ssu9g1830 935 SMART ANK_2a 629 658 IPR002110 GO:0005515
Ssu9g1830 935 SMART ANK_2a 590 619 IPR002110 GO:0005515
Ssu9g1830 935 SMART iq_5 707 729 IPR000048 GO:0005515
Ssu9g1830 935 SMART iq_5 768 790 IPR000048 GO:0005515
Ssu9g1830 935 SMART iq_5 791 813 IPR000048 GO:0005515
Ssu9g1830 935 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Ssu9g1830 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 820 IPR027417 -
Ssu9g1830 935 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 933 - -
Ssu9g1830 935 MobiDBLite consensus disorder prediction 133 186 - -
Ssu9g1830 935 Pfam IQ calmodulin-binding motif 771 789 IPR000048 GO:0005515
Ssu9g1830 935 Pfam IQ calmodulin-binding motif 794 813 IPR000048 GO:0005515
Ssu9g1830 935 Gene3D Immunoglobulins 354 449 IPR013783 -
Ssu9g1830 935 PANTHER CALMODULIN-BINDING PROTEIN 1 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1830 Ssu-Chr9 55667558 55679759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1830 5 902 CAMTA Transcription Factor Family AT1G67310 52.103 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Ssu9g1830 CG-1 3.1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1830 K21596 - gmx:100791430 1527.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1830 9 55667558 55679759 Ssu5g2340 5 66040843 66049329 PCT