Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1825 atgcccTTGTTAATGTCTATGGAAGgaaagaaatataaaaccaGTAGTCAGAATTTACGGCATCCAAGCTGCCAGGTGGAAGGATGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAACATAGAGTTTGTGAAACTCATTCTAAATCCCCTAAGGTGATTATATCTGGCTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGACGACGTCTTTCAGATCACAATTCAAGGCGCCGCAAACCTCAGCCTGACACAATGCAATTAAATCCATCAGCTTTGTCTTCATCACCCTATGATGGGAGGCAAATAATGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCGTGGCAAGACATACACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTCCCGAAGCCTGCAAAAGCCTTCAATAAGATGCCAAGTATTGTCTCTATGCTTCCTGATGACTCCGGTGGCCTTCTAACATCCAGAGGCATAGCAATGAAGAGTATTGTTCCAGGTATAGAAGATCCCATTACATCGTGTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATATGAGACAAAGTCCCTTTCCCTGGACCACTCCACTCGGACAAGCGGCATCACTCAGTCCGTAACAAACGCAATGAGTCAGCGTTTAACACTTCCTTCTTCAGAATATTGGCACACTGATCAACCACCACCCCCTTCCACTATGTGTATCTCATTCTCGGATTGTGATAGTAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGAATCAGGTTTTCCTTGCAACCAACTGGATTAA 900 0.4356 MPLLMSMEGKKYKTSSQNLRHPSCQVEGCGLDLSSAKDYHRKHRVCETHSKSPKVIISGLERRFCQQCSRFHALSEFDDKKRSCRRRLSDHNSRRRKPQPDTMQLNPSALSSSPYDGRQIMSPFAFSRTATNLAWQDIHSSKLPQTKDFLPKPAKAFNKMPSIVSMLPDDSGGLLTSRGIAMKSIVPGIEDPITSCDPNATQDVNRALSLLSTNSWGAYETKSLSLDHSTRTSGITQSVTNAMSQRLTLPSSEYWHTDQPPPPSTMCISFSDCDSSNRFQDFQLLSAPYESGFPCNQLD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1825 299 MobiDBLite consensus disorder prediction 82 114 - -
Ssu9g1825 299 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 6 298 - -
Ssu9g1825 299 ProSiteProfiles Zinc finger SBP-type profile. 21 98 IPR004333 GO:0003677
Ssu9g1825 299 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 298 IPR044817 GO:0003677
Ssu9g1825 299 Pfam SBP domain 24 97 IPR004333 GO:0003677
Ssu9g1825 299 MobiDBLite consensus disorder prediction 99 114 - -
Ssu9g1825 299 Gene3D - 14 85 IPR036893 GO:0003677|GO:0005634
Ssu9g1825 299 SUPERFAMILY SBT domain 22 104 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1825 Ssu-Chr9 55619549 55623126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1825 17 265 SBP-box Gene Family AT5G43270 43.798 3.05e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu9g1825 SBP 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1825 - - gmx:100781289 479.559