Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1811 ATGGCGGAGGAAGAAGAGAACGGAGTATCGATCGAACCCGAGTTCCCGAAGGGTCGGGTGAAGAAGATAATGACGCTGGACAAAGACGTGAAGAGGGTGAGCTCAGAAGCGTTGTTCCTGGTGTCGCGCTCCACGGAATTATTCCTCCAATTTCTGGCTGAAAAGTCAGCGCAGGTTGCAATTGGGAAGAAACGCAAGACCGTGAATCTCGAACACATAAGAACGGCGGTGAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGATGAGCTTCCGCCGCCTTCTCAGCCCCAGCCAATAAGCCCGCTCCGCCTGCGGCTCGGCCCAAATTCGATGCCCCTCCGCCTGGCACTCGCCGTATCGATCATTTCTTCCCAAAGCCAGAACCTGAAAACCCAGCCCAGGCCCAAGCCCAAGCCAACCGCCAGTACCCATGGATGA 441 0.5624 MAEEEENGVSIEPEFPKGRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIGKKRKTVNLEHIRTAVKRHQPTRDFLLDELPPPSQPQPISPLRLRLGPNSMPLRLALAVSIISSQSQNLKTQPRPKPKPTASTHG 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1811 146 MobiDBLite consensus disorder prediction 127 146 - -
Ssu9g1811 146 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 3 100 - -
Ssu9g1811 146 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 100 - -
Ssu9g1811 146 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 77 IPR003958 -
Ssu9g1811 146 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982
Ssu9g1811 146 SUPERFAMILY Histone-fold 13 80 IPR009072 GO:0046982
Ssu9g1811 146 MobiDBLite consensus disorder prediction 84 104 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1811 4 97 CCAAT-HAP5 Transcription Factor Family AT5G43250 71.277 4.30e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu9g1811 CBFD_NFYB_HMF 5.2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1811 - - gmx:100793004 155.606